miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25036 3' -62.3 NC_005336.1 + 5390 0.66 0.633788
Target:  5'- cGgCGGCgUGCCGccCUCcgcgaugccguGCCGGCUCgCGGg -3'
miRNA:   3'- -CgGCCG-AUGGCc-GAG-----------UGGCCGAG-GCC- -5'
25036 3' -62.3 NC_005336.1 + 5812 0.68 0.509256
Target:  5'- aGgCGGCcgagGCCGGCgccgcgCGCgCGGCcagCCGGc -3'
miRNA:   3'- -CgGCCGa---UGGCCGa-----GUG-GCCGa--GGCC- -5'
25036 3' -62.3 NC_005336.1 + 6216 0.68 0.527904
Target:  5'- cGUCGGCgGCCGGCgcgCGagcaCGGCggCCGu -3'
miRNA:   3'- -CGGCCGaUGGCCGa--GUg---GCCGa-GGCc -5'
25036 3' -62.3 NC_005336.1 + 7481 0.71 0.372412
Target:  5'- cGCCGGa-GCCGGUgaGCCGGUagCCGGc -3'
miRNA:   3'- -CGGCCgaUGGCCGagUGGCCGa-GGCC- -5'
25036 3' -62.3 NC_005336.1 + 8710 0.66 0.624042
Target:  5'- -gCGGCaugcaGCCGGCgguggggacgCACUGGUUUCGGc -3'
miRNA:   3'- cgGCCGa----UGGCCGa---------GUGGCCGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 10270 0.67 0.565903
Target:  5'- uGCCGGCgcagCGGCgugccgaGCCGGCgcaCGGc -3'
miRNA:   3'- -CGGCCGaug-GCCGag-----UGGCCGag-GCC- -5'
25036 3' -62.3 NC_005336.1 + 10704 0.66 0.633788
Target:  5'- cGUCGGCgg-CGGCUCGuCCcaGGCcugCCGGc -3'
miRNA:   3'- -CGGCCGaugGCCGAGU-GG--CCGa--GGCC- -5'
25036 3' -62.3 NC_005336.1 + 11231 0.67 0.585176
Target:  5'- -aCGGC-GCCGGCgugcuugaUCACCGGCaCCa- -3'
miRNA:   3'- cgGCCGaUGGCCG--------AGUGGCCGaGGcc -5'
25036 3' -62.3 NC_005336.1 + 11842 0.66 0.653271
Target:  5'- cGCCGGCcACCaGCgCGuCCGGCgCCa- -3'
miRNA:   3'- -CGGCCGaUGGcCGaGU-GGCCGaGGcc -5'
25036 3' -62.3 NC_005336.1 + 14913 0.66 0.653271
Target:  5'- aGuuGGCUGCCcGCgCGCCGcGCggCCGc -3'
miRNA:   3'- -CggCCGAUGGcCGaGUGGC-CGa-GGCc -5'
25036 3' -62.3 NC_005336.1 + 14990 0.69 0.490892
Target:  5'- cGCCGaGCgccggGCCucgGGCUCGCgCGGCgCgCGGg -3'
miRNA:   3'- -CGGC-CGa----UGG---CCGAGUG-GCCGaG-GCC- -5'
25036 3' -62.3 NC_005336.1 + 15950 0.72 0.320913
Target:  5'- cGCCGGCgaugaGCUGGUcagCACCGaGCgCCGGc -3'
miRNA:   3'- -CGGCCGa----UGGCCGa--GUGGC-CGaGGCC- -5'
25036 3' -62.3 NC_005336.1 + 17676 0.74 0.229013
Target:  5'- uGCCGGacgaGCCGGCacgcgCGCCuGGCUCCGu -3'
miRNA:   3'- -CGGCCga--UGGCCGa----GUGG-CCGAGGCc -5'
25036 3' -62.3 NC_005336.1 + 18074 0.7 0.388124
Target:  5'- cGCCGGCaguCCGcGCgcgagguccagCACCGGCguccacCCGGg -3'
miRNA:   3'- -CGGCCGau-GGC-CGa----------GUGGCCGa-----GGCC- -5'
25036 3' -62.3 NC_005336.1 + 18689 0.66 0.653271
Target:  5'- cGCCGaGCUGUCGGggauCUCgcgguggcgguGCCGGCgCCGGu -3'
miRNA:   3'- -CGGC-CGAUGGCC----GAG-----------UGGCCGaGGCC- -5'
25036 3' -62.3 NC_005336.1 + 20081 0.78 0.128643
Target:  5'- cGCgGGCUcGgCGGCUCGCCGGC-CUGGc -3'
miRNA:   3'- -CGgCCGA-UgGCCGAGUGGCCGaGGCC- -5'
25036 3' -62.3 NC_005336.1 + 22425 0.73 0.281165
Target:  5'- cGCUGGUgcuggACCGcggggcGCUCACgCGGCUCuCGGa -3'
miRNA:   3'- -CGGCCGa----UGGC------CGAGUG-GCCGAG-GCC- -5'
25036 3' -62.3 NC_005336.1 + 22622 0.71 0.380214
Target:  5'- cGuuGGUUGuuGGUUCgguagaaggaGCUGGCUCUGGa -3'
miRNA:   3'- -CggCCGAUggCCGAG----------UGGCCGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 23971 0.7 0.420822
Target:  5'- cCCGGCgaggaCGuGCUCcgccgcGCCGGCUCCGu -3'
miRNA:   3'- cGGCCGaug--GC-CGAG------UGGCCGAGGCc -5'
25036 3' -62.3 NC_005336.1 + 24967 0.67 0.604572
Target:  5'- -aCGGUUACCucgauCUgCACCGGCUCgGGu -3'
miRNA:   3'- cgGCCGAUGGcc---GA-GUGGCCGAGgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.