miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25038 3' -62 NC_005336.1 + 3932 0.7 0.388598
Target:  5'- aGCG-GGCCgCCGCGGcgcagCGCCGCGc- -3'
miRNA:   3'- gUGUaCCGGgGGUGCCa----GCGGCGCau -5'
25038 3' -62 NC_005336.1 + 44854 0.7 0.405076
Target:  5'- cCGCcgGcGCgCCCGCGGgCGuCCGCGUGc -3'
miRNA:   3'- -GUGuaC-CGgGGGUGCCaGC-GGCGCAU- -5'
25038 3' -62 NC_005336.1 + 100868 0.69 0.413479
Target:  5'- cCACGcGGCCUUCGCGGcgCGCgCGCGg- -3'
miRNA:   3'- -GUGUaCCGGGGGUGCCa-GCG-GCGCau -5'
25038 3' -62 NC_005336.1 + 52724 0.69 0.413479
Target:  5'- uGCAUGGaCCCCgACGGgCGCUacaacaGCGUGg -3'
miRNA:   3'- gUGUACC-GGGGgUGCCaGCGG------CGCAU- -5'
25038 3' -62 NC_005336.1 + 117368 0.69 0.413479
Target:  5'- cCGCGUGaGCgCCCCGCGGUCcaGCaccaGCGg- -3'
miRNA:   3'- -GUGUAC-CG-GGGGUGCCAG--CGg---CGCau -5'
25038 3' -62 NC_005336.1 + 7221 0.69 0.413479
Target:  5'- gACAguccGGCCaCUCGCGGUCGCacgGCGUc -3'
miRNA:   3'- gUGUa---CCGG-GGGUGCCAGCGg--CGCAu -5'
25038 3' -62 NC_005336.1 + 26481 0.69 0.425421
Target:  5'- aACAcGGCCgcguuCCCgucggcgucggugcuGCGGUCGCCGCGa- -3'
miRNA:   3'- gUGUaCCGG-----GGG---------------UGCCAGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 93402 0.69 0.439318
Target:  5'- aACAgGcGCCCCgCGCGGgCGCgCGCGUGu -3'
miRNA:   3'- gUGUaC-CGGGG-GUGCCaGCG-GCGCAU- -5'
25038 3' -62 NC_005336.1 + 13061 0.69 0.457046
Target:  5'- cCACGacGGCCCCaacgccgagagCGCGGUgcaggcggCGCCGCGUGc -3'
miRNA:   3'- -GUGUa-CCGGGG-----------GUGCCA--------GCGGCGCAU- -5'
25038 3' -62 NC_005336.1 + 38680 0.69 0.457046
Target:  5'- ----cGGCUCCC-CGGucUCGCCGCGg- -3'
miRNA:   3'- guguaCCGGGGGuGCC--AGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 75410 0.68 0.466053
Target:  5'- gGCGUGuGCCCCacugucucgGCGGUCuGCCGCa-- -3'
miRNA:   3'- gUGUAC-CGGGGg--------UGCCAG-CGGCGcau -5'
25038 3' -62 NC_005336.1 + 125048 0.68 0.466053
Target:  5'- cCACAUcGGUaccgcaaCUCGCGGUCGCCgGUGUGg -3'
miRNA:   3'- -GUGUA-CCGg------GGGUGCCAGCGG-CGCAU- -5'
25038 3' -62 NC_005336.1 + 71516 0.68 0.466053
Target:  5'- aACGUGGCCaugCCCGCGGaCGCCuuccggcaGCGg- -3'
miRNA:   3'- gUGUACCGG---GGGUGCCaGCGG--------CGCau -5'
25038 3' -62 NC_005336.1 + 113612 0.68 0.466053
Target:  5'- gGCGUGGagaCCaagauCGCGGcCGCCGCGUc -3'
miRNA:   3'- gUGUACCg--GGg----GUGCCaGCGGCGCAu -5'
25038 3' -62 NC_005336.1 + 88721 0.68 0.475152
Target:  5'- gGCGuUGGCCUgcuCCGCGGUgCGCuCGCGg- -3'
miRNA:   3'- gUGU-ACCGGG---GGUGCCA-GCG-GCGCau -5'
25038 3' -62 NC_005336.1 + 25684 0.68 0.484338
Target:  5'- ----cGGUCCaCCGCGGUCuCCGCGg- -3'
miRNA:   3'- guguaCCGGG-GGUGCCAGcGGCGCau -5'
25038 3' -62 NC_005336.1 + 130086 0.68 0.493608
Target:  5'- gACGUGGUCUCCGCGGaCGagagCGCGg- -3'
miRNA:   3'- gUGUACCGGGGGUGCCaGCg---GCGCau -5'
25038 3' -62 NC_005336.1 + 41110 0.68 0.502958
Target:  5'- gGCGUGGCCaucaUCACGGccUUGCCGCc-- -3'
miRNA:   3'- gUGUACCGGg---GGUGCC--AGCGGCGcau -5'
25038 3' -62 NC_005336.1 + 64634 0.68 0.502958
Target:  5'- gCGCGaGGCCUUCACGGacuucgCGCCGCu-- -3'
miRNA:   3'- -GUGUaCCGGGGGUGCCa-----GCGGCGcau -5'
25038 3' -62 NC_005336.1 + 71647 0.68 0.502958
Target:  5'- cCACGgaGGCCCaggcguUCGCGG-CGCCGCGg- -3'
miRNA:   3'- -GUGUa-CCGGG------GGUGCCaGCGGCGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.