miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25039 5' -53.3 NC_005336.1 + 18266 0.73 0.687439
Target:  5'- -gGGCUUGGaGUUGgGCAUgGCGAGCg -3'
miRNA:   3'- ggUUGGACUaCAGCgCGUAgCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 122663 0.73 0.687439
Target:  5'- cCCGGCCaGcgGUCGaucuGCcuUCGCGAGCg -3'
miRNA:   3'- -GGUUGGaCuaCAGCg---CGu-AGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 83632 0.73 0.707834
Target:  5'- gCCGuCUcGAUGUCGCGCGUaagGCuGAGCg -3'
miRNA:   3'- -GGUuGGaCUACAGCGCGUAg--CG-CUCG- -5'
25039 5' -53.3 NC_005336.1 + 41949 0.73 0.707834
Target:  5'- cCCGACCauGUGuUCGCGCAgcuUgGUGAGCa -3'
miRNA:   3'- -GGUUGGacUAC-AGCGCGU---AgCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 14999 0.73 0.717937
Target:  5'- cCgGGCCUcGGgcUCGCGCGgcgCGCGGGCg -3'
miRNA:   3'- -GgUUGGA-CUacAGCGCGUa--GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 42655 0.72 0.727965
Target:  5'- gCCAGCagcugGUCGCGgGcCGCGAGCa -3'
miRNA:   3'- -GGUUGgacuaCAGCGCgUaGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 35973 0.72 0.737908
Target:  5'- gCAGCCgagGAUGgCGCGCggCGCgGAGUu -3'
miRNA:   3'- gGUUGGa--CUACaGCGCGuaGCG-CUCG- -5'
25039 5' -53.3 NC_005336.1 + 71918 0.72 0.737908
Target:  5'- cCCAGCCUGGaccgcGUCgGCGCggCGCuGGCg -3'
miRNA:   3'- -GGUUGGACUa----CAG-CGCGuaGCGcUCG- -5'
25039 5' -53.3 NC_005336.1 + 108977 0.72 0.737908
Target:  5'- aCCAGCCgcUGGUG-CGCGCccgCGCGGucGCg -3'
miRNA:   3'- -GGUUGG--ACUACaGCGCGua-GCGCU--CG- -5'
25039 5' -53.3 NC_005336.1 + 67597 0.72 0.737908
Target:  5'- gCCAGgCUGcgGUcucgCGCGCGUCGauaGGGCc -3'
miRNA:   3'- -GGUUgGACuaCA----GCGCGUAGCg--CUCG- -5'
25039 5' -53.3 NC_005336.1 + 98031 0.72 0.737908
Target:  5'- cCCAACCUGGa--CGCGC-UCGCGguGGCc -3'
miRNA:   3'- -GGUUGGACUacaGCGCGuAGCGC--UCG- -5'
25039 5' -53.3 NC_005336.1 + 60816 0.72 0.744812
Target:  5'- uCCGACaUGAUGUccuggaacuccgcgCGCGCGUCG-GGGCu -3'
miRNA:   3'- -GGUUGgACUACA--------------GCGCGUAGCgCUCG- -5'
25039 5' -53.3 NC_005336.1 + 90041 0.72 0.756531
Target:  5'- uCCAGCCUGGUGgugcucUCGCcgaagacGCGgcuguaccgCGCGAGCc -3'
miRNA:   3'- -GGUUGGACUAC------AGCG-------CGUa--------GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 35303 0.72 0.7575
Target:  5'- uCCAGCaCUG-UGagcaCGCGCAgcgccccgCGCGAGCg -3'
miRNA:   3'- -GGUUG-GACuACa---GCGCGUa-------GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 14908 0.72 0.7575
Target:  5'- cCCAgACCgUGAacacgUGUCGCGCAgggCGCcGGCg -3'
miRNA:   3'- -GGU-UGG-ACU-----ACAGCGCGUa--GCGcUCG- -5'
25039 5' -53.3 NC_005336.1 + 110016 0.72 0.76713
Target:  5'- gCCAGCCgcGAguUCGCGCAggcggugCGCGAGg -3'
miRNA:   3'- -GGUUGGa-CUacAGCGCGUa------GCGCUCg -5'
25039 5' -53.3 NC_005336.1 + 124366 0.72 0.76713
Target:  5'- aCgGACUUGGUGgaCGCGCGgcugCGCGAGa -3'
miRNA:   3'- -GgUUGGACUACa-GCGCGUa---GCGCUCg -5'
25039 5' -53.3 NC_005336.1 + 65222 0.72 0.770948
Target:  5'- gCAAgCUGcgcgcgcgcgugcccAUGUCGCGCGUCGUcGGCc -3'
miRNA:   3'- gGUUgGAC---------------UACAGCGCGUAGCGcUCG- -5'
25039 5' -53.3 NC_005336.1 + 58493 0.72 0.776637
Target:  5'- gCAGCCaGGgcgCGCGCGcgcgcUCGCGGGCu -3'
miRNA:   3'- gGUUGGaCUacaGCGCGU-----AGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 19444 0.72 0.776637
Target:  5'- uCCgAGCUUGGUGUCGCaC-UCGuCGAGCc -3'
miRNA:   3'- -GG-UUGGACUACAGCGcGuAGC-GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.