miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25040 3' -57.2 NC_005336.1 + 130307 0.66 0.800024
Target:  5'- cGAGGCUGCGCUcuUCcucgaggagacgGGCGCgagcccGGUGCcCGc -3'
miRNA:   3'- -CUCUGACGCGA--AG------------UCGCG------CCACGaGU- -5'
25040 3' -57.2 NC_005336.1 + 25799 0.68 0.723378
Target:  5'- uGGAUUGCGCUUUcuguuuacacuGGCGCugguGGUGgUCAg -3'
miRNA:   3'- cUCUGACGCGAAG-----------UCGCG----CCACgAGU- -5'
25040 3' -57.2 NC_005336.1 + 13305 0.68 0.708288
Target:  5'- gGAGACgagggcggcggggaUGUGCgaguuuucagggUUGGUGCGGUGCUCGc -3'
miRNA:   3'- -CUCUG--------------ACGCGa-----------AGUCGCGCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 130534 1.08 0.001985
Target:  5'- aGAGACUGCGCUUCAGCGCGGUGCUCAc -3'
miRNA:   3'- -CUCUGACGCGAAGUCGCGCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 124039 0.67 0.78161
Target:  5'- -cGACUGuCGCgucgcgCGGcCGCGGcGCUCGc -3'
miRNA:   3'- cuCUGAC-GCGaa----GUC-GCGCCaCGAGU- -5'
25040 3' -57.2 NC_005336.1 + 20285 0.67 0.78161
Target:  5'- uGGGGCUGCGggagugCGGcCGCGGUGUcCAu -3'
miRNA:   3'- -CUCUGACGCgaa---GUC-GCGCCACGaGU- -5'
25040 3' -57.2 NC_005336.1 + 58151 0.67 0.762648
Target:  5'- -uGGCUGCGCggcgaCGGCGCGGccGCg-- -3'
miRNA:   3'- cuCUGACGCGaa---GUCGCGCCa-CGagu -5'
25040 3' -57.2 NC_005336.1 + 97915 0.67 0.752984
Target:  5'- cGGAC-GCGCcgcagggCAGCGCGGUGaUCGc -3'
miRNA:   3'- cUCUGaCGCGaa-----GUCGCGCCACgAGU- -5'
25040 3' -57.2 NC_005336.1 + 50840 0.67 0.751038
Target:  5'- uGAGGCUGCGCacgagcccgcucUCGGCGCGGacgucgaagGcCUCGg -3'
miRNA:   3'- -CUCUGACGCGa-----------AGUCGCGCCa--------C-GAGU- -5'
25040 3' -57.2 NC_005336.1 + 69800 0.68 0.73334
Target:  5'- cAGACgGUGC-UCAGCGUGuGcUGCUCGc -3'
miRNA:   3'- cUCUGaCGCGaAGUCGCGC-C-ACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 118167 0.67 0.743212
Target:  5'- -cGGCgagGCGCUUgaCGGCGCGGaaCUCGg -3'
miRNA:   3'- cuCUGa--CGCGAA--GUCGCGCCacGAGU- -5'
25040 3' -57.2 NC_005336.1 + 15763 0.67 0.752984
Target:  5'- aGGGCgGCGCgcaCGGCGCGcguGUGCUUg -3'
miRNA:   3'- cUCUGaCGCGaa-GUCGCGC---CACGAGu -5'
25040 3' -57.2 NC_005336.1 + 80115 0.66 0.799117
Target:  5'- aGGGCUGCGCagCGGCcuGCucaccgaGGUGUUCAc -3'
miRNA:   3'- cUCUGACGCGaaGUCG--CG-------CCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 94263 0.67 0.743212
Target:  5'- -cGGCgagGUGCUcgaCGGCGCGGUGUcCAg -3'
miRNA:   3'- cuCUGa--CGCGAa--GUCGCGCCACGaGU- -5'
25040 3' -57.2 NC_005336.1 + 92960 0.66 0.794562
Target:  5'- aGGACuUGCGCUgguugaugcccaggCAGaugGCGGUGUUCGu -3'
miRNA:   3'- cUCUG-ACGCGAa-------------GUCg--CGCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 50751 0.67 0.752984
Target:  5'- -cGcCUGCGaaacuaCGGCGcCGGUGCUCAc -3'
miRNA:   3'- cuCuGACGCgaa---GUCGC-GCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 112058 0.68 0.73334
Target:  5'- --aGCUGcCGCUUgCAGCGCucgaggucgcGGUGCUCc -3'
miRNA:   3'- cucUGAC-GCGAA-GUCGCG----------CCACGAGu -5'
25040 3' -57.2 NC_005336.1 + 72039 0.68 0.713336
Target:  5'- cGGcACUGCGCgcggUCAagGCGGUGUUCGg -3'
miRNA:   3'- cUC-UGACGCGa---AGUcgCGCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 94060 0.66 0.787195
Target:  5'- -cGuCUGUGCgacuucauggugCGGCGCGGUGcCUCGc -3'
miRNA:   3'- cuCuGACGCGaa----------GUCGCGCCAC-GAGU- -5'
25040 3' -57.2 NC_005336.1 + 129815 0.67 0.78161
Target:  5'- -cGACUGCGCga-AGCugGUGGUGCg-- -3'
miRNA:   3'- cuCUGACGCGaagUCG--CGCCACGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.