miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25041 3' -53.2 NC_005336.1 + 134269 0.72 0.737145
Target:  5'- gCUAgacCUGGGcgacugCGGAGACCCCAGagGCCg -3'
miRNA:   3'- -GGUa--GACCUa-----GUUUCUGGGGUCg-CGG- -5'
25041 3' -53.2 NC_005336.1 + 129598 1.14 0.002481
Target:  5'- gCCAUCUGGAUCAAAGACCCCAGCGCCu -3'
miRNA:   3'- -GGUAGACCUAGUUUCUGGGGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 126650 0.8 0.326539
Target:  5'- aCCGUCUGccgcccacagccGA-CGAGGACCUCGGCGCCu -3'
miRNA:   3'- -GGUAGAC------------CUaGUUUCUGGGGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 125174 0.67 0.943329
Target:  5'- uCCAugcUCUGcGAcugccggccgUC--GGACCCgCGGCGCCg -3'
miRNA:   3'- -GGU---AGAC-CU----------AGuuUCUGGG-GUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 124907 0.71 0.785494
Target:  5'- aCgGUCUGGGUCu---GCCUCAGCGgCg -3'
miRNA:   3'- -GgUAGACCUAGuuucUGGGGUCGCgG- -5'
25041 3' -53.2 NC_005336.1 + 120761 0.71 0.776071
Target:  5'- gCCAg--GGAcuaccUCAGAGACCgcgucuccgacaCCGGCGCCu -3'
miRNA:   3'- -GGUagaCCU-----AGUUUCUGG------------GGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 118709 0.66 0.96338
Target:  5'- --cUCcGGccgCAaggcaccgaacAAGACCCCGGUGCCg -3'
miRNA:   3'- gguAGaCCua-GU-----------UUCUGGGGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 118377 0.67 0.947815
Target:  5'- ---cCUGGAUggcggcagCGAAGGCCUCgaAGUGCCg -3'
miRNA:   3'- gguaGACCUA--------GUUUCUGGGG--UCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 114991 0.7 0.862805
Target:  5'- aCGUgUGcGAg-GAGGGCCCCuggcGGCGCCg -3'
miRNA:   3'- gGUAgAC-CUagUUUCUGGGG----UCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 109803 0.68 0.905037
Target:  5'- aCCGUCUGccacgcCAucGACCCC-GCGCUc -3'
miRNA:   3'- -GGUAGACcua---GUuuCUGGGGuCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 108925 0.7 0.85498
Target:  5'- gCCAcgCUGGA-CGAcGACCUCAuCGCCa -3'
miRNA:   3'- -GGUa-GACCUaGUUuCUGGGGUcGCGG- -5'
25041 3' -53.2 NC_005336.1 + 106975 0.69 0.877802
Target:  5'- aCAUCUGGGccaucgagcgCGAGGACCUgacgcuggCGGCGCUc -3'
miRNA:   3'- gGUAGACCUa---------GUUUCUGGG--------GUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 104366 0.68 0.933624
Target:  5'- aCUAUaaaUGGAgUCGcGAGACCUgGGCGUCg -3'
miRNA:   3'- -GGUAg--ACCU-AGU-UUCUGGGgUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 102029 0.67 0.943329
Target:  5'- cCCAUCgUGGccagcAUCAAGGGCCaCagcuacgaAGCGCUg -3'
miRNA:   3'- -GGUAG-ACC-----UAGUUUCUGG-Gg-------UCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 101978 0.72 0.756836
Target:  5'- uCCAUCgugcucGaGAUCGAcgacgugaAGAUCUCGGCGCCg -3'
miRNA:   3'- -GGUAGa-----C-CUAGUU--------UCUGGGGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 101392 0.67 0.943329
Target:  5'- gCAcuUCcGGAcgCAGAGACgCCAGCGgCa -3'
miRNA:   3'- gGU--AGaCCUa-GUUUCUGgGGUCGCgG- -5'
25041 3' -53.2 NC_005336.1 + 99594 0.67 0.938599
Target:  5'- uUCGUCUGcGGcgugcUCAAGGGCCgCGcgcugcGCGCCg -3'
miRNA:   3'- -GGUAGAC-CU-----AGUUUCUGGgGU------CGCGG- -5'
25041 3' -53.2 NC_005336.1 + 99513 0.67 0.943329
Target:  5'- gCCG-CUGGAUagcGGACCgC-GCGCCu -3'
miRNA:   3'- -GGUaGACCUAguuUCUGGgGuCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 98700 0.66 0.959837
Target:  5'- uCCGUCaucacGcGcgCAGAGAUCCCGGUgGCCc -3'
miRNA:   3'- -GGUAGa----C-CuaGUUUCUGGGGUCG-CGG- -5'
25041 3' -53.2 NC_005336.1 + 97151 0.73 0.717074
Target:  5'- gCCGgagCcGcGGUCGAAGACCUCcgcGGCGCCg -3'
miRNA:   3'- -GGUa--GaC-CUAGUUUCUGGGG---UCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.