Results 21 - 40 of 397 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
25042 | 3' | -57.1 | NC_005336.1 | + | 41170 | 0.76 | 0.330033 |
Target: 5'- cUCcgCGcgcuuCGCGCGCugCGGCGCGCg- -3' miRNA: 3'- -AGuaGCu----GCGUGCGugGCUGCGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 130603 | 0.76 | 0.333027 |
Target: 5'- cCAUCGcucgcgacugguggaGCGCGCGCugCG-CGCGCUGc -3' miRNA: 3'- aGUAGC---------------UGCGUGCGugGCuGCGCGAU- -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 50748 | 0.76 | 0.337555 |
Target: 5'- uUCAaCGugGUgccGCGCACCauGACGCGCUAc -3' miRNA: 3'- -AGUaGCugCG---UGCGUGG--CUGCGCGAU- -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 68369 | 0.76 | 0.337555 |
Target: 5'- --uUCGACGCGCggGCGCCGGCggccGCGCUGu -3' miRNA: 3'- aguAGCUGCGUG--CGUGGCUG----CGCGAU- -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 49947 | 0.75 | 0.345202 |
Target: 5'- -gGUCGGCGCAgCGCAUCuGCGCGCa- -3' miRNA: 3'- agUAGCUGCGU-GCGUGGcUGCGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 78156 | 0.75 | 0.345202 |
Target: 5'- gCGUcCGGCGCGCGCGCgGGCGUGgUGg -3' miRNA: 3'- aGUA-GCUGCGUGCGUGgCUGCGCgAU- -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 60897 | 0.75 | 0.345202 |
Target: 5'- cCGUCGGCcuaGCGCGCGgCGGCGUGCg- -3' miRNA: 3'- aGUAGCUG---CGUGCGUgGCUGCGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 99519 | 0.75 | 0.352972 |
Target: 5'- gCG-CGGCGCGC-CGCCGGCGCGCc- -3' miRNA: 3'- aGUaGCUGCGUGcGUGGCUGCGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 14888 | 0.75 | 0.352972 |
Target: 5'- gUCGUCGcGCGCGCGCcuCCGGCGCaGUUGg -3' miRNA: 3'- -AGUAGC-UGCGUGCGu-GGCUGCG-CGAU- -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 66671 | 0.75 | 0.360866 |
Target: 5'- ---cCGACGCACGCGCgGGC-CGCUGg -3' miRNA: 3'- aguaGCUGCGUGCGUGgCUGcGCGAU- -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 92485 | 0.75 | 0.360866 |
Target: 5'- uUCAUcucCGGCGUGCGCACCGGCG-GCg- -3' miRNA: 3'- -AGUA---GCUGCGUGCGUGGCUGCgCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 11655 | 0.75 | 0.368881 |
Target: 5'- gUCGUCGGCgGCGCGC-CCaGGCGCGUg- -3' miRNA: 3'- -AGUAGCUG-CGUGCGuGG-CUGCGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 21116 | 0.75 | 0.368881 |
Target: 5'- cCGUUG-CGCuuGCGCGCCGGCGUGCa- -3' miRNA: 3'- aGUAGCuGCG--UGCGUGGCUGCGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 113449 | 0.75 | 0.368881 |
Target: 5'- cUCcgCGGCGCGCGCGCCcGGCGaccgcgucaCGCUGg -3' miRNA: 3'- -AGuaGCUGCGUGCGUGG-CUGC---------GCGAU- -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 125934 | 0.75 | 0.377018 |
Target: 5'- gUCG-CGGCGCcgccguGCGaCACCGACGUGCUGc -3' miRNA: 3'- -AGUaGCUGCG------UGC-GUGGCUGCGCGAU- -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 128031 | 0.74 | 0.385274 |
Target: 5'- gCGUgaUGGCGCugGCGCugcgCGGCGCGCUAg -3' miRNA: 3'- aGUA--GCUGCGugCGUG----GCUGCGCGAU- -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 123650 | 0.74 | 0.38861 |
Target: 5'- uUCAUCGACGCggGCGUgagcauggccacgucGCgCGACGCGCg- -3' miRNA: 3'- -AGUAGCUGCG--UGCG---------------UG-GCUGCGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 56768 | 0.74 | 0.39365 |
Target: 5'- --uUCGuGCGCAUGCACCGGCaGCGCc- -3' miRNA: 3'- aguAGC-UGCGUGCGUGGCUG-CGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 41847 | 0.74 | 0.402142 |
Target: 5'- cCGUC-ACGCGCGCG-CGGCGCGCg- -3' miRNA: 3'- aGUAGcUGCGUGCGUgGCUGCGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 6006 | 0.74 | 0.402142 |
Target: 5'- gUCcgUGugGCAgCGCACCG-CGCGCa- -3' miRNA: 3'- -AGuaGCugCGU-GCGUGGCuGCGCGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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