miRNA display CGI


Results 21 - 40 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 5' -62.7 NC_005336.1 + 11956 0.75 0.197212
Target:  5'- gGUCCGCGCCCGCGGCcagcaccgcgcgcagGCcGGCGGgUUGa -3'
miRNA:   3'- -CGGGCGCGGGCGCUG---------------CG-UCGCCaAGC- -5'
25042 5' -62.7 NC_005336.1 + 122503 0.75 0.200031
Target:  5'- -gCCGaCGCCCGCaaucaACGCAGCGGUgCGg -3'
miRNA:   3'- cgGGC-GCGGGCGc----UGCGUCGCCAaGC- -5'
25042 5' -62.7 NC_005336.1 + 19760 0.75 0.204807
Target:  5'- cGCUCGgugcCGCCCGCGGCGaCGGCGGcgCc -3'
miRNA:   3'- -CGGGC----GCGGGCGCUGC-GUCGCCaaGc -5'
25042 5' -62.7 NC_005336.1 + 50506 0.75 0.204807
Target:  5'- gGCgCCGCGCCCGCGGCGgaaGGCcugUCGg -3'
miRNA:   3'- -CG-GGCGCGGGCGCUGCg--UCGccaAGC- -5'
25042 5' -62.7 NC_005336.1 + 55648 0.75 0.204807
Target:  5'- cGCCgCGUGCuCCGCGACaGCGGUGGUc-- -3'
miRNA:   3'- -CGG-GCGCG-GGCGCUG-CGUCGCCAagc -5'
25042 5' -62.7 NC_005336.1 + 42354 0.74 0.214154
Target:  5'- cGCgCGCGCUcucggccuccaugCGCGGCGUGGCGGUggUCGa -3'
miRNA:   3'- -CGgGCGCGG-------------GCGCUGCGUCGCCA--AGC- -5'
25042 5' -62.7 NC_005336.1 + 6623 0.74 0.219731
Target:  5'- cGUCUGCGCCCGCG-CGCAGCa----- -3'
miRNA:   3'- -CGGGCGCGGGCGCuGCGUCGccaagc -5'
25042 5' -62.7 NC_005336.1 + 13397 0.74 0.224908
Target:  5'- uGCUCGCGCCCGCcg-GCGGCGGg--- -3'
miRNA:   3'- -CGGGCGCGGGCGcugCGUCGCCaagc -5'
25042 5' -62.7 NC_005336.1 + 36293 0.74 0.224908
Target:  5'- cGUgCGCGCCCgGCGGCgGC-GCGGUUCc -3'
miRNA:   3'- -CGgGCGCGGG-CGCUG-CGuCGCCAAGc -5'
25042 5' -62.7 NC_005336.1 + 97660 0.74 0.224908
Target:  5'- aGgCCGCGCgCCGCGGCGCcuCGGggUCGc -3'
miRNA:   3'- -CgGGCGCG-GGCGCUGCGucGCCa-AGC- -5'
25042 5' -62.7 NC_005336.1 + 128105 0.74 0.230189
Target:  5'- aUCCGCGCCUGCGAgGCGGaGGUcgCGc -3'
miRNA:   3'- cGGGCGCGGGCGCUgCGUCgCCAa-GC- -5'
25042 5' -62.7 NC_005336.1 + 133917 0.74 0.230189
Target:  5'- aGCCCaCGCCCGCGGCGCcG-GGcUCGc -3'
miRNA:   3'- -CGGGcGCGGGCGCUGCGuCgCCaAGC- -5'
25042 5' -62.7 NC_005336.1 + 114378 0.74 0.235574
Target:  5'- cGgCCGCGCCgCGgagcuggagauCGACGCGGCGGUggcCGg -3'
miRNA:   3'- -CgGGCGCGG-GC-----------GCUGCGUCGCCAa--GC- -5'
25042 5' -62.7 NC_005336.1 + 46396 0.73 0.24666
Target:  5'- cGCgCGCGCCCGCG-CGgGGCGccuGUUUGg -3'
miRNA:   3'- -CGgGCGCGGGCGCuGCgUCGC---CAAGC- -5'
25042 5' -62.7 NC_005336.1 + 60448 0.73 0.251788
Target:  5'- uGUCCGCGCCCGgccuucaucgagaUGcCGCGGCGGcgCGu -3'
miRNA:   3'- -CGGGCGCGGGC-------------GCuGCGUCGCCaaGC- -5'
25042 5' -62.7 NC_005336.1 + 135819 0.73 0.252363
Target:  5'- --gCGgGCCCG-GACGCGGCGGggCGg -3'
miRNA:   3'- cggGCgCGGGCgCUGCGUCGCCaaGC- -5'
25042 5' -62.7 NC_005336.1 + 12261 0.73 0.252363
Target:  5'- gGUCUGCGCCCGCGGCGaugAGCGucUUCa -3'
miRNA:   3'- -CGGGCGCGGGCGCUGCg--UCGCc-AAGc -5'
25042 5' -62.7 NC_005336.1 + 120586 0.73 0.252363
Target:  5'- gGCUCGCGgCgGCGACGCcGGCGGacgccgUCGa -3'
miRNA:   3'- -CGGGCGCgGgCGCUGCG-UCGCCa-----AGC- -5'
25042 5' -62.7 NC_005336.1 + 96102 0.73 0.258175
Target:  5'- gGCCaGCGCCCGCaACGC-GCGGccUCGg -3'
miRNA:   3'- -CGGgCGCGGGCGcUGCGuCGCCa-AGC- -5'
25042 5' -62.7 NC_005336.1 + 101536 0.73 0.258175
Target:  5'- gGCCCGCuagcacGCCCGCGucUGCGGCGaGcUCGg -3'
miRNA:   3'- -CGGGCG------CGGGCGCu-GCGUCGC-CaAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.