Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25043 | 3' | -50.5 | NC_005336.1 | + | 129159 | 1.13 | 0.005677 |
Target: 5'- gGACGGGAAGACGAUGAUCUUCGACGCg -3' miRNA: 3'- -CUGCCCUUCUGCUACUAGAAGCUGCG- -5' |
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25043 | 3' | -50.5 | NC_005336.1 | + | 10382 | 0.78 | 0.630734 |
Target: 5'- cGCGGGggGGCGGgcuGUCUUCGAagGCg -3' miRNA: 3'- cUGCCCuuCUGCUac-UAGAAGCUg-CG- -5' |
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25043 | 3' | -50.5 | NC_005336.1 | + | 68980 | 0.76 | 0.703097 |
Target: 5'- cAUGGugucgccguagaaGAAGACGAUGAccgUCUUCGugGCg -3' miRNA: 3'- cUGCC-------------CUUCUGCUACU---AGAAGCugCG- -5' |
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25043 | 3' | -50.5 | NC_005336.1 | + | 32263 | 0.74 | 0.829397 |
Target: 5'- cGCGcGGAAGcCGGUGuUCaUCGGCGCg -3' miRNA: 3'- cUGC-CCUUCuGCUACuAGaAGCUGCG- -5' |
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25043 | 3' | -50.5 | NC_005336.1 | + | 10602 | 0.73 | 0.837956 |
Target: 5'- cGAgGGGAGGACGAccg-CggCGGCGCg -3' miRNA: 3'- -CUgCCCUUCUGCUacuaGaaGCUGCG- -5' |
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25043 | 3' | -50.5 | NC_005336.1 | + | 52207 | 0.73 | 0.86241 |
Target: 5'- cGACGGGAAGACGcucacgGUGAa---CGACGUg -3' miRNA: 3'- -CUGCCCUUCUGC------UACUagaaGCUGCG- -5' |
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25043 | 3' | -50.5 | NC_005336.1 | + | 132857 | 0.72 | 0.877621 |
Target: 5'- aGGCGGGcgcAGACG-UGGUCUgCGACGa -3' miRNA: 3'- -CUGCCCu--UCUGCuACUAGAaGCUGCg -5' |
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25043 | 3' | -50.5 | NC_005336.1 | + | 99399 | 0.72 | 0.891901 |
Target: 5'- gGGCGGGAgAGuccuucgcgcGCGAgGA-CUUCGACGCg -3' miRNA: 3'- -CUGCCCU-UC----------UGCUaCUaGAAGCUGCG- -5' |
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25043 | 3' | -50.5 | NC_005336.1 | + | 47017 | 0.72 | 0.901322 |
Target: 5'- cGACGGcguggucgcggagaaGGAGGCGGUGGUg--CGGCGCg -3' miRNA: 3'- -CUGCC---------------CUUCUGCUACUAgaaGCUGCG- -5' |
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25043 | 3' | -50.5 | NC_005336.1 | + | 110562 | 0.71 | 0.911494 |
Target: 5'- cACGGcGAAGGCGAgcaGcgCggCGGCGCa -3' miRNA: 3'- cUGCC-CUUCUGCUa--CuaGaaGCUGCG- -5' |
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25043 | 3' | -50.5 | NC_005336.1 | + | 27680 | 0.71 | 0.923303 |
Target: 5'- -cUGGGGccgcgccauguGGGCGGUGAUCUUcaucgugcugCGGCGCu -3' miRNA: 3'- cuGCCCU-----------UCUGCUACUAGAA----------GCUGCG- -5' |
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25043 | 3' | -50.5 | NC_005336.1 | + | 60164 | 0.71 | 0.928827 |
Target: 5'- cGCGGGAGGA-GAUGG-CUUgggugcCGGCGCg -3' miRNA: 3'- cUGCCCUUCUgCUACUaGAA------GCUGCG- -5' |
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25043 | 3' | -50.5 | NC_005336.1 | + | 82394 | 0.71 | 0.934097 |
Target: 5'- cACGaGggGugGAUGAUCUUCauuagGGCGUu -3' miRNA: 3'- cUGCcCuuCugCUACUAGAAG-----CUGCG- -5' |
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25043 | 3' | -50.5 | NC_005336.1 | + | 3664 | 0.7 | 0.94839 |
Target: 5'- cGGCGGGAGGGagg-GGUC-UCGACuGCg -3' miRNA: 3'- -CUGCCCUUCUgcuaCUAGaAGCUG-CG- -5' |
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25043 | 3' | -50.5 | NC_005336.1 | + | 3664 | 0.7 | 0.94839 |
Target: 5'- cGGCGGGAGGGagg-GGUC-UCGACuGCg -3' miRNA: 3'- -CUGCCCUUCUgcuaCUAGaAGCUG-CG- -5' |
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25043 | 3' | -50.5 | NC_005336.1 | + | 55949 | 0.7 | 0.956678 |
Target: 5'- aACGuGGAGGGCG-UGcgCUUCGugGa -3' miRNA: 3'- cUGC-CCUUCUGCuACuaGAAGCugCg -5' |
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25043 | 3' | -50.5 | NC_005336.1 | + | 74149 | 0.69 | 0.967329 |
Target: 5'- gGGCGGGAAGGCuGcgGAgaaggaGACGCc -3' miRNA: 3'- -CUGCCCUUCUG-CuaCUagaag-CUGCG- -5' |
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25043 | 3' | -50.5 | NC_005336.1 | + | 97880 | 0.69 | 0.970426 |
Target: 5'- cGACGGGAucuccgAGACcGUGcUCUUCccgcggccgGACGCg -3' miRNA: 3'- -CUGCCCU------UCUGcUACuAGAAG---------CUGCG- -5' |
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25043 | 3' | -50.5 | NC_005336.1 | + | 80228 | 0.69 | 0.973307 |
Target: 5'- --aGGuGAAGACGcgGcUCggCGGCGCg -3' miRNA: 3'- cugCC-CUUCUGCuaCuAGaaGCUGCG- -5' |
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25043 | 3' | -50.5 | NC_005336.1 | + | 21340 | 0.68 | 0.975979 |
Target: 5'- aGCGGc---ACGA-GGUCUUCGACGCc -3' miRNA: 3'- cUGCCcuucUGCUaCUAGAAGCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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