miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25043 3' -50.5 NC_005336.1 + 3664 0.7 0.94839
Target:  5'- cGGCGGGAGGGagg-GGUC-UCGACuGCg -3'
miRNA:   3'- -CUGCCCUUCUgcuaCUAGaAGCUG-CG- -5'
25043 3' -50.5 NC_005336.1 + 3664 0.7 0.94839
Target:  5'- cGGCGGGAGGGagg-GGUC-UCGACuGCg -3'
miRNA:   3'- -CUGCCCUUCUgcuaCUAGaAGCUG-CG- -5'
25043 3' -50.5 NC_005336.1 + 3737 0.66 0.996198
Target:  5'- cGGCGGGc--GCGGUGAgggaagcCGGCGCg -3'
miRNA:   3'- -CUGCCCuucUGCUACUagaa---GCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 3737 0.66 0.996198
Target:  5'- cGGCGGGc--GCGGUGAgggaagcCGGCGCg -3'
miRNA:   3'- -CUGCCCuucUGCUACUagaa---GCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 10382 0.78 0.630734
Target:  5'- cGCGGGggGGCGGgcuGUCUUCGAagGCg -3'
miRNA:   3'- cUGCCCuuCUGCUac-UAGAAGCUg-CG- -5'
25043 3' -50.5 NC_005336.1 + 10602 0.73 0.837956
Target:  5'- cGAgGGGAGGACGAccg-CggCGGCGCg -3'
miRNA:   3'- -CUgCCCUUCUGCUacuaGaaGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 10912 0.68 0.975979
Target:  5'- cGGCaGGAAG-CGGUGG-CagCGACGCa -3'
miRNA:   3'- -CUGcCCUUCuGCUACUaGaaGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 21340 0.68 0.975979
Target:  5'- aGCGGc---ACGA-GGUCUUCGACGCc -3'
miRNA:   3'- cUGCCcuucUGCUaCUAGAAGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 27680 0.71 0.923303
Target:  5'- -cUGGGGccgcgccauguGGGCGGUGAUCUUcaucgugcugCGGCGCu -3'
miRNA:   3'- cuGCCCU-----------UCUGCUACUAGAA----------GCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 32263 0.74 0.829397
Target:  5'- cGCGcGGAAGcCGGUGuUCaUCGGCGCg -3'
miRNA:   3'- cUGC-CCUUCuGCUACuAGaAGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 34928 0.68 0.980727
Target:  5'- uGACGGcGAGACGAg---CUUgGAUGCu -3'
miRNA:   3'- -CUGCCcUUCUGCUacuaGAAgCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 38242 0.66 0.993043
Target:  5'- cGAgGGGAAGACcGUGugcUCgaUGGCGCc -3'
miRNA:   3'- -CUgCCCUUCUGcUACu--AGaaGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 47017 0.72 0.901322
Target:  5'- cGACGGcguggucgcggagaaGGAGGCGGUGGUg--CGGCGCg -3'
miRNA:   3'- -CUGCC---------------CUUCUGCUACUAgaaGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 52064 0.67 0.98952
Target:  5'- cGCGcGGAGGugGgcGA-CUUCGACa- -3'
miRNA:   3'- cUGC-CCUUCugCuaCUaGAAGCUGcg -5'
25043 3' -50.5 NC_005336.1 + 52207 0.73 0.86241
Target:  5'- cGACGGGAAGACGcucacgGUGAa---CGACGUg -3'
miRNA:   3'- -CUGCCCUUCUGC------UACUagaaGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 55949 0.7 0.956678
Target:  5'- aACGuGGAGGGCG-UGcgCUUCGugGa -3'
miRNA:   3'- cUGC-CCUUCUGCuACuaGAAGCugCg -5'
25043 3' -50.5 NC_005336.1 + 60164 0.71 0.928827
Target:  5'- cGCGGGAGGA-GAUGG-CUUgggugcCGGCGCg -3'
miRNA:   3'- cUGCCCUUCUgCUACUaGAA------GCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 66112 0.67 0.990822
Target:  5'- aGACGGagccaGAGGGCGugGUGcUCUUCuACGCg -3'
miRNA:   3'- -CUGCC-----CUUCUGC--UACuAGAAGcUGCG- -5'
25043 3' -50.5 NC_005336.1 + 68100 0.67 0.988077
Target:  5'- aGCGGGccGGCGGcccGAUCa-CGGCGCg -3'
miRNA:   3'- cUGCCCuuCUGCUa--CUAGaaGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 68980 0.76 0.703097
Target:  5'- cAUGGugucgccguagaaGAAGACGAUGAccgUCUUCGugGCg -3'
miRNA:   3'- cUGCC-------------CUUCUGCUACU---AGAAGCugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.