miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25043 3' -50.5 NC_005336.1 + 3737 0.66 0.996198
Target:  5'- cGGCGGGc--GCGGUGAgggaagcCGGCGCg -3'
miRNA:   3'- -CUGCCCuucUGCUACUagaa---GCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 34928 0.68 0.980727
Target:  5'- uGACGGcGAGACGAg---CUUgGAUGCu -3'
miRNA:   3'- -CUGCCcUUCUGCUacuaGAAgCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 91666 0.68 0.98282
Target:  5'- cGCGGGAGGcguCGGUGAgcagCGcGCGCa -3'
miRNA:   3'- cUGCCCUUCu--GCUACUagaaGC-UGCG- -5'
25043 3' -50.5 NC_005336.1 + 68100 0.67 0.988077
Target:  5'- aGCGGGccGGCGGcccGAUCa-CGGCGCg -3'
miRNA:   3'- cUGCCCuuCUGCUa--CUAGaaGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 74814 0.67 0.98952
Target:  5'- gGACGcGGAGGGCG-UGggCgugaUGGCGCg -3'
miRNA:   3'- -CUGC-CCUUCUGCuACuaGaa--GCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 66112 0.67 0.990822
Target:  5'- aGACGGagccaGAGGGCGugGUGcUCUUCuACGCg -3'
miRNA:   3'- -CUGCC-----CUUCUGC--UACuAGAAGcUGCG- -5'
25043 3' -50.5 NC_005336.1 + 133362 0.67 0.991993
Target:  5'- aGGCGGcGgcGGCGcUGggCUUCG-CGCc -3'
miRNA:   3'- -CUGCC-CuuCUGCuACuaGAAGCuGCG- -5'
25043 3' -50.5 NC_005336.1 + 100949 0.66 0.993043
Target:  5'- gGACGcGGAgAGccgccgcaccGCGGaGAUCUUCGACcGCg -3'
miRNA:   3'- -CUGC-CCU-UC----------UGCUaCUAGAAGCUG-CG- -5'
25043 3' -50.5 NC_005336.1 + 97214 0.66 0.996198
Target:  5'- -uCGGGAAGACGcUGAccgcgugccaccUCaUCGccACGCa -3'
miRNA:   3'- cuGCCCUUCUGCuACU------------AGaAGC--UGCG- -5'
25043 3' -50.5 NC_005336.1 + 21340 0.68 0.975979
Target:  5'- aGCGGc---ACGA-GGUCUUCGACGCc -3'
miRNA:   3'- cUGCCcuucUGCUaCUAGAAGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 74149 0.69 0.967329
Target:  5'- gGGCGGGAAGGCuGcgGAgaaggaGACGCc -3'
miRNA:   3'- -CUGCCCUUCUG-CuaCUagaag-CUGCG- -5'
25043 3' -50.5 NC_005336.1 + 55949 0.7 0.956678
Target:  5'- aACGuGGAGGGCG-UGcgCUUCGugGa -3'
miRNA:   3'- cUGC-CCUUCUGCuACuaGAAGCugCg -5'
25043 3' -50.5 NC_005336.1 + 32263 0.74 0.829397
Target:  5'- cGCGcGGAAGcCGGUGuUCaUCGGCGCg -3'
miRNA:   3'- cUGC-CCUUCuGCUACuAGaAGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 10602 0.73 0.837956
Target:  5'- cGAgGGGAGGACGAccg-CggCGGCGCg -3'
miRNA:   3'- -CUgCCCUUCUGCUacuaGaaGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 99399 0.72 0.891901
Target:  5'- gGGCGGGAgAGuccuucgcgcGCGAgGA-CUUCGACGCg -3'
miRNA:   3'- -CUGCCCU-UC----------UGCUaCUaGAAGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 110562 0.71 0.911494
Target:  5'- cACGGcGAAGGCGAgcaGcgCggCGGCGCa -3'
miRNA:   3'- cUGCC-CUUCUGCUa--CuaGaaGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 27680 0.71 0.923303
Target:  5'- -cUGGGGccgcgccauguGGGCGGUGAUCUUcaucgugcugCGGCGCu -3'
miRNA:   3'- cuGCCCU-----------UCUGCUACUAGAA----------GCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 60164 0.71 0.928827
Target:  5'- cGCGGGAGGA-GAUGG-CUUgggugcCGGCGCg -3'
miRNA:   3'- cUGCCCUUCUgCUACUaGAA------GCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 82394 0.71 0.934097
Target:  5'- cACGaGggGugGAUGAUCUUCauuagGGCGUu -3'
miRNA:   3'- cUGCcCuuCugCUACUAGAAG-----CUGCG- -5'
25043 3' -50.5 NC_005336.1 + 3664 0.7 0.94839
Target:  5'- cGGCGGGAGGGagg-GGUC-UCGACuGCg -3'
miRNA:   3'- -CUGCCCUUCUgcuaCUAGaAGCUG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.