miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25043 5' -65.2 NC_005336.1 + 16683 0.72 0.229448
Target:  5'- cGUGCGuCCGuCCGcCGG-CG-CCUCCCCg -3'
miRNA:   3'- -CGCGC-GGC-GGC-GCCaGCaGGAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 35902 0.72 0.234739
Target:  5'- gGCGcCGCCGCCGCGGUgccgcgugaCGUgcuUCUgCCCa -3'
miRNA:   3'- -CGC-GCGGCGGCGCCA---------GCA---GGAgGGGa -5'
25043 5' -65.2 NC_005336.1 + 29734 0.71 0.240132
Target:  5'- -aGCGCCG-CGCGGgccucugCGUCUUCCUCa -3'
miRNA:   3'- cgCGCGGCgGCGCCa------GCAGGAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 100557 0.71 0.240132
Target:  5'- cGCGgGCCGguCCGCGG-CGUagaCCUCCUCg -3'
miRNA:   3'- -CGCgCGGC--GGCGCCaGCA---GGAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 56584 0.71 0.245629
Target:  5'- gGCaGCGCCGCgCGCccGUCGUCCgcgCgCCCUg -3'
miRNA:   3'- -CG-CGCGGCG-GCGc-CAGCAGGa--G-GGGA- -5'
25043 5' -65.2 NC_005336.1 + 110722 0.71 0.251229
Target:  5'- cCGCGaCCGgCGCGGUCGcCCUUgucgCCCUu -3'
miRNA:   3'- cGCGC-GGCgGCGCCAGCaGGAG----GGGA- -5'
25043 5' -65.2 NC_005336.1 + 81837 0.71 0.256934
Target:  5'- cCGCGCCGCCGCaGUUGUCgaUgCCg -3'
miRNA:   3'- cGCGCGGCGGCGcCAGCAGgaGgGGa -5'
25043 5' -65.2 NC_005336.1 + 76326 0.71 0.256934
Target:  5'- cGCGgGCCGCUgGCGccCGUCCUCCUUg -3'
miRNA:   3'- -CGCgCGGCGG-CGCcaGCAGGAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 15549 0.71 0.260991
Target:  5'- uCGCGCCGCgCGCGGcgcgggucgcguuuUCGUCCaCCuCCa -3'
miRNA:   3'- cGCGCGGCG-GCGCC--------------AGCAGGaGG-GGa -5'
25043 5' -65.2 NC_005336.1 + 117375 0.71 0.262745
Target:  5'- -aGCGCC-CCGCGGUCcagcaccagcggGUCCUUCUCg -3'
miRNA:   3'- cgCGCGGcGGCGCCAG------------CAGGAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 66892 0.7 0.280818
Target:  5'- aGCuCGCCGCCGUcGUUGUUCUCCgCa -3'
miRNA:   3'- -CGcGCGGCGGCGcCAGCAGGAGGgGa -5'
25043 5' -65.2 NC_005336.1 + 71198 0.7 0.287058
Target:  5'- cGgGCGUCGCCaucaGCGGUCGUCCaaacacgaccUCgCCUu -3'
miRNA:   3'- -CgCGCGGCGG----CGCCAGCAGG----------AGgGGA- -5'
25043 5' -65.2 NC_005336.1 + 130498 0.7 0.287058
Target:  5'- cGCGCGcCCGCCGCGGag--CCUgCUCUc -3'
miRNA:   3'- -CGCGC-GGCGGCGCCagcaGGAgGGGA- -5'
25043 5' -65.2 NC_005336.1 + 86943 0.7 0.287058
Target:  5'- -aGCG-CGCUGCGGUCGaCCUCUUCg -3'
miRNA:   3'- cgCGCgGCGGCGCCAGCaGGAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 101800 0.7 0.292767
Target:  5'- cGCGCGCCGUCgcuccucggggagGCGGaacaCGUCCUCCa-- -3'
miRNA:   3'- -CGCGCGGCGG-------------CGCCa---GCAGGAGGgga -5'
25043 5' -65.2 NC_005336.1 + 97146 0.7 0.293407
Target:  5'- aGCaCGCCggaGCCGCGGUCGaagaCCUCCgCg -3'
miRNA:   3'- -CGcGCGG---CGGCGCCAGCa---GGAGGgGa -5'
25043 5' -65.2 NC_005336.1 + 109675 0.7 0.293407
Target:  5'- cGCGCaGCUgGCgGCGGUCGUCCagCCa- -3'
miRNA:   3'- -CGCG-CGG-CGgCGCCAGCAGGagGGga -5'
25043 5' -65.2 NC_005336.1 + 95542 0.7 0.293407
Target:  5'- cGCGCGCCGCgCGCGcG-CG-CCUCCa-- -3'
miRNA:   3'- -CGCGCGGCG-GCGC-CaGCaGGAGGgga -5'
25043 5' -65.2 NC_005336.1 + 43617 0.7 0.299865
Target:  5'- cGCGCGCuggcgaCGCCGUGGagaUCGUCUUCUgCg -3'
miRNA:   3'- -CGCGCG------GCGGCGCC---AGCAGGAGGgGa -5'
25043 5' -65.2 NC_005336.1 + 29293 0.7 0.306432
Target:  5'- gGCGUGCCGCCcuuuGCGccacUCCUCCCCc -3'
miRNA:   3'- -CGCGCGGCGG----CGCcagcAGGAGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.