miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25043 5' -65.2 NC_005336.1 + 129194 1.08 0.000552
Target:  5'- cGCGCGCCGCCGCGGUCGUCCUCCCCUc -3'
miRNA:   3'- -CGCGCGGCGGCGCCAGCAGGAGGGGA- -5'
25043 5' -65.2 NC_005336.1 + 108399 0.77 0.104327
Target:  5'- aGCGCGCCaCCgaggGCGG-CGUCUUCCCCa -3'
miRNA:   3'- -CGCGCGGcGG----CGCCaGCAGGAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 42636 0.76 0.126944
Target:  5'- cGCGCGgCGCCGCGGagGUCUUCgaCCg -3'
miRNA:   3'- -CGCGCgGCGGCGCCagCAGGAGg-GGa -5'
25043 5' -65.2 NC_005336.1 + 9677 0.75 0.136541
Target:  5'- uGCGCgGCCGCgGCGG-CGgCCUCCUCg -3'
miRNA:   3'- -CGCG-CGGCGgCGCCaGCaGGAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 68462 0.74 0.154027
Target:  5'- gGCGCGCCGCCGCGGacgCGg-CUCUgCg -3'
miRNA:   3'- -CGCGCGGCGGCGCCa--GCagGAGGgGa -5'
25043 5' -65.2 NC_005336.1 + 124299 0.74 0.154027
Target:  5'- gGCGCaGCCGCCGcCGGUacUGcUCUCCCCg -3'
miRNA:   3'- -CGCG-CGGCGGC-GCCA--GCaGGAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 103634 0.74 0.160421
Target:  5'- cGCGCGaggaCGCCGUGGUCGaggugcaggaguucUCCUCCgCg -3'
miRNA:   3'- -CGCGCg---GCGGCGCCAGC--------------AGGAGGgGa -5'
25043 5' -65.2 NC_005336.1 + 67833 0.74 0.161573
Target:  5'- gGCGCGCCGCgGUGGUCG-CgCUCCa-- -3'
miRNA:   3'- -CGCGCGGCGgCGCCAGCaG-GAGGgga -5'
25043 5' -65.2 NC_005336.1 + 29261 0.74 0.169451
Target:  5'- uGCGCGCCacgcuGCUGCGGgaggCGUCC-CCUCg -3'
miRNA:   3'- -CGCGCGG-----CGGCGCCa---GCAGGaGGGGa -5'
25043 5' -65.2 NC_005336.1 + 85876 0.74 0.173518
Target:  5'- uGCGCGUCGCggaCGCGGUCGUgCgCCUCa -3'
miRNA:   3'- -CGCGCGGCG---GCGCCAGCAgGaGGGGa -5'
25043 5' -65.2 NC_005336.1 + 93789 0.73 0.190666
Target:  5'- gGCGCGCCGCUGCGG-CGacUCCUgUgCUg -3'
miRNA:   3'- -CGCGCGGCGGCGCCaGC--AGGAgGgGA- -5'
25043 5' -65.2 NC_005336.1 + 76159 0.73 0.190666
Target:  5'- aGCGCGCCGCCguugaagaGCGG-CGUCUgCCCg- -3'
miRNA:   3'- -CGCGCGGCGG--------CGCCaGCAGGaGGGga -5'
25043 5' -65.2 NC_005336.1 + 29231 0.73 0.195179
Target:  5'- aGUGCGCCGCCGCGcugcUCG-CCUUCgCCg -3'
miRNA:   3'- -CGCGCGGCGGCGCc---AGCaGGAGG-GGa -5'
25043 5' -65.2 NC_005336.1 + 13286 0.73 0.199321
Target:  5'- cGCGCGUCGCCgccuaggugccgcGCGG-CGUCCUCgaCCg -3'
miRNA:   3'- -CGCGCGGCGG-------------CGCCaGCAGGAGg-GGa -5'
25043 5' -65.2 NC_005336.1 + 55651 0.73 0.204487
Target:  5'- cGCGUGCUccgcgacaGCgGUGGUCuGUCCUCCCgCUg -3'
miRNA:   3'- -CGCGCGG--------CGgCGCCAG-CAGGAGGG-GA- -5'
25043 5' -65.2 NC_005336.1 + 455 0.73 0.204487
Target:  5'- cGCGUGCCGCgGgCGGccgcgCGUCCgcgacggCCCCg -3'
miRNA:   3'- -CGCGCGGCGgC-GCCa----GCAGGa------GGGGa -5'
25043 5' -65.2 NC_005336.1 + 455 0.73 0.204487
Target:  5'- cGCGUGCCGCgGgCGGccgcgCGUCCgcgacggCCCCg -3'
miRNA:   3'- -CGCGCGGCGgC-GCCa----GCAGGa------GGGGa -5'
25043 5' -65.2 NC_005336.1 + 9698 0.72 0.213683
Target:  5'- cGC-CGCCGCCaaguggaGCGG-CGUCCUgCCCg -3'
miRNA:   3'- -CGcGCGGCGG-------CGCCaGCAGGAgGGGa -5'
25043 5' -65.2 NC_005336.1 + 59569 0.72 0.219168
Target:  5'- gGCGCGCCGCCGagccgCGUCUUCaCCUg -3'
miRNA:   3'- -CGCGCGGCGGCgcca-GCAGGAG-GGGa -5'
25043 5' -65.2 NC_005336.1 + 16683 0.72 0.229448
Target:  5'- cGUGCGuCCGuCCGcCGG-CG-CCUCCCCg -3'
miRNA:   3'- -CGCGC-GGC-GGC-GCCaGCaGGAGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.