miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25043 5' -65.2 NC_005336.1 + 455 0.73 0.204487
Target:  5'- cGCGUGCCGCgGgCGGccgcgCGUCCgcgacggCCCCg -3'
miRNA:   3'- -CGCGCGGCGgC-GCCa----GCAGGa------GGGGa -5'
25043 5' -65.2 NC_005336.1 + 455 0.73 0.204487
Target:  5'- cGCGUGCCGCgGgCGGccgcgCGUCCgcgacggCCCCg -3'
miRNA:   3'- -CGCGCGGCGgC-GCCa----GCAGGa------GGGGa -5'
25043 5' -65.2 NC_005336.1 + 3932 0.66 0.513786
Target:  5'- aGCGgGCCGCCGCGG-CG-CagcgCCgCg -3'
miRNA:   3'- -CGCgCGGCGGCGCCaGCaGga--GGgGa -5'
25043 5' -65.2 NC_005336.1 + 3962 0.68 0.378112
Target:  5'- aGCaGCGCCGCCaGCGGcag-CCgCCCCg -3'
miRNA:   3'- -CG-CGCGGCGG-CGCCagcaGGaGGGGa -5'
25043 5' -65.2 NC_005336.1 + 6103 0.66 0.504672
Target:  5'- cGCGCGCCcucGCCGCGcagCG-CCagCUCCUg -3'
miRNA:   3'- -CGCGCGG---CGGCGCca-GCaGGa-GGGGA- -5'
25043 5' -65.2 NC_005336.1 + 6682 0.67 0.468954
Target:  5'- aGCaGCGCCGCCaGCGG-CGUCa-CgCCg -3'
miRNA:   3'- -CG-CGCGGCGG-CGCCaGCAGgaGgGGa -5'
25043 5' -65.2 NC_005336.1 + 9042 0.66 0.477766
Target:  5'- aGCaGCGCC-CCgaggGCGaGUCGUCCgUCUCCa -3'
miRNA:   3'- -CG-CGCGGcGG----CGC-CAGCAGG-AGGGGa -5'
25043 5' -65.2 NC_005336.1 + 9677 0.75 0.136541
Target:  5'- uGCGCgGCCGCgGCGG-CGgCCUCCUCg -3'
miRNA:   3'- -CGCG-CGGCGgCGCCaGCaGGAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 9698 0.72 0.213683
Target:  5'- cGC-CGCCGCCaaguggaGCGG-CGUCCUgCCCg -3'
miRNA:   3'- -CGcGCGGCGG-------CGCCaGCAGGAgGGGa -5'
25043 5' -65.2 NC_005336.1 + 10434 0.66 0.504672
Target:  5'- cGCGCGCUGCCGCaGGaUGUCCa----- -3'
miRNA:   3'- -CGCGCGGCGGCG-CCaGCAGGagggga -5'
25043 5' -65.2 NC_005336.1 + 10627 0.69 0.362909
Target:  5'- cGCGCGCCcuCCGCGucgaagaucaUCGUCUUCCCg- -3'
miRNA:   3'- -CGCGCGGc-GGCGCc---------AGCAGGAGGGga -5'
25043 5' -65.2 NC_005336.1 + 11109 0.67 0.451586
Target:  5'- uGCGCGCgGCCgagaccgacaGCGGguccgCGUUCUUCCaCUc -3'
miRNA:   3'- -CGCGCGgCGG----------CGCCa----GCAGGAGGG-GA- -5'
25043 5' -65.2 NC_005336.1 + 11678 0.66 0.495627
Target:  5'- cGUGCGCCGCaGCaGcgCGaCCUCCgCCUc -3'
miRNA:   3'- -CGCGCGGCGgCGcCa-GCaGGAGG-GGA- -5'
25043 5' -65.2 NC_005336.1 + 13286 0.73 0.199321
Target:  5'- cGCGCGUCGCCgccuaggugccgcGCGG-CGUCCUCgaCCg -3'
miRNA:   3'- -CGCGCGGCGG-------------CGCCaGCAGGAGg-GGa -5'
25043 5' -65.2 NC_005336.1 + 13641 0.66 0.522967
Target:  5'- cUGgGCCGCUGCGccgaggacGUCGcgcucuUCCUCCUCUu -3'
miRNA:   3'- cGCgCGGCGGCGC--------CAGC------AGGAGGGGA- -5'
25043 5' -65.2 NC_005336.1 + 15012 0.66 0.504672
Target:  5'- uCGCGCgGCgCGCGGgcggCGUCggcgcgcgCCCCg -3'
miRNA:   3'- cGCGCGgCG-GCGCCa---GCAGga------GGGGa -5'
25043 5' -65.2 NC_005336.1 + 15149 0.69 0.362909
Target:  5'- aGCaCGCCGCCGCccaCGUCCUCCa-- -3'
miRNA:   3'- -CGcGCGGCGGCGccaGCAGGAGGgga -5'
25043 5' -65.2 NC_005336.1 + 15152 0.66 0.474231
Target:  5'- -aGCGCaGCCGCGGUCGgcggguucaggcgCCacggCCCUg -3'
miRNA:   3'- cgCGCGgCGGCGCCAGCa------------GGa---GGGGa -5'
25043 5' -65.2 NC_005336.1 + 15549 0.71 0.260991
Target:  5'- uCGCGCCGCgCGCGGcgcgggucgcguuuUCGUCCaCCuCCa -3'
miRNA:   3'- cGCGCGGCG-GCGCC--------------AGCAGGaGG-GGa -5'
25043 5' -65.2 NC_005336.1 + 16683 0.72 0.229448
Target:  5'- cGUGCGuCCGuCCGcCGG-CG-CCUCCCCg -3'
miRNA:   3'- -CGCGC-GGC-GGC-GCCaGCaGGAGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.