miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25043 5' -65.2 NC_005336.1 + 43617 0.7 0.299865
Target:  5'- cGCGCGCuggcgaCGCCGUGGagaUCGUCUUCUgCg -3'
miRNA:   3'- -CGCGCG------GCGGCGCC---AGCAGGAGGgGa -5'
25043 5' -65.2 NC_005336.1 + 35902 0.72 0.234739
Target:  5'- gGCGcCGCCGCCGCGGUgccgcgugaCGUgcuUCUgCCCa -3'
miRNA:   3'- -CGC-GCGGCGGCGCCA---------GCA---GGAgGGGa -5'
25043 5' -65.2 NC_005336.1 + 110722 0.71 0.251229
Target:  5'- cCGCGaCCGgCGCGGUCGcCCUUgucgCCCUu -3'
miRNA:   3'- cGCGC-GGCgGCGCCAGCaGGAG----GGGA- -5'
25043 5' -65.2 NC_005336.1 + 81837 0.71 0.256934
Target:  5'- cCGCGCCGCCGCaGUUGUCgaUgCCg -3'
miRNA:   3'- cGCGCGGCGGCGcCAGCAGgaGgGGa -5'
25043 5' -65.2 NC_005336.1 + 76326 0.71 0.256934
Target:  5'- cGCGgGCCGCUgGCGccCGUCCUCCUUg -3'
miRNA:   3'- -CGCgCGGCGG-CGCcaGCAGGAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 15549 0.71 0.260991
Target:  5'- uCGCGCCGCgCGCGGcgcgggucgcguuuUCGUCCaCCuCCa -3'
miRNA:   3'- cGCGCGGCG-GCGCC--------------AGCAGGaGG-GGa -5'
25043 5' -65.2 NC_005336.1 + 86943 0.7 0.287058
Target:  5'- -aGCG-CGCUGCGGUCGaCCUCUUCg -3'
miRNA:   3'- cgCGCgGCGGCGCCAGCaGGAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 130498 0.7 0.287058
Target:  5'- cGCGCGcCCGCCGCGGag--CCUgCUCUc -3'
miRNA:   3'- -CGCGC-GGCGGCGCCagcaGGAgGGGA- -5'
25043 5' -65.2 NC_005336.1 + 109675 0.7 0.293407
Target:  5'- cGCGCaGCUgGCgGCGGUCGUCCagCCa- -3'
miRNA:   3'- -CGCG-CGG-CGgCGCCAGCAGGagGGga -5'
25043 5' -65.2 NC_005336.1 + 16683 0.72 0.229448
Target:  5'- cGUGCGuCCGuCCGcCGG-CG-CCUCCCCg -3'
miRNA:   3'- -CGCGC-GGC-GGC-GCCaGCaGGAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 124049 0.72 0.229448
Target:  5'- uGCGCGCCGCCcugGCGacgCGgCCUCCCg- -3'
miRNA:   3'- -CGCGCGGCGG---CGCca-GCaGGAGGGga -5'
25043 5' -65.2 NC_005336.1 + 59569 0.72 0.219168
Target:  5'- gGCGCGCCGCCGagccgCGUCUUCaCCUg -3'
miRNA:   3'- -CGCGCGGCGGCgcca-GCAGGAG-GGGa -5'
25043 5' -65.2 NC_005336.1 + 9677 0.75 0.136541
Target:  5'- uGCGCgGCCGCgGCGG-CGgCCUCCUCg -3'
miRNA:   3'- -CGCG-CGGCGgCGCCaGCaGGAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 68462 0.74 0.154027
Target:  5'- gGCGCGCCGCCGCGGacgCGg-CUCUgCg -3'
miRNA:   3'- -CGCGCGGCGGCGCCa--GCagGAGGgGa -5'
25043 5' -65.2 NC_005336.1 + 124299 0.74 0.154027
Target:  5'- gGCGCaGCCGCCGcCGGUacUGcUCUCCCCg -3'
miRNA:   3'- -CGCG-CGGCGGC-GCCA--GCaGGAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 67833 0.74 0.161573
Target:  5'- gGCGCGCCGCgGUGGUCG-CgCUCCa-- -3'
miRNA:   3'- -CGCGCGGCGgCGCCAGCaG-GAGGgga -5'
25043 5' -65.2 NC_005336.1 + 76159 0.73 0.190666
Target:  5'- aGCGCGCCGCCguugaagaGCGG-CGUCUgCCCg- -3'
miRNA:   3'- -CGCGCGGCGG--------CGCCaGCAGGaGGGga -5'
25043 5' -65.2 NC_005336.1 + 93789 0.73 0.190666
Target:  5'- gGCGCGCCGCUGCGG-CGacUCCUgUgCUg -3'
miRNA:   3'- -CGCGCGGCGGCGCCaGC--AGGAgGgGA- -5'
25043 5' -65.2 NC_005336.1 + 13286 0.73 0.199321
Target:  5'- cGCGCGUCGCCgccuaggugccgcGCGG-CGUCCUCgaCCg -3'
miRNA:   3'- -CGCGCGGCGG-------------CGCCaGCAGGAGg-GGa -5'
25043 5' -65.2 NC_005336.1 + 455 0.73 0.204487
Target:  5'- cGCGUGCCGCgGgCGGccgcgCGUCCgcgacggCCCCg -3'
miRNA:   3'- -CGCGCGGCGgC-GCCa----GCAGGa------GGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.