miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25045 5' -55.1 NC_005336.1 + 68424 0.71 0.723234
Target:  5'- gCGUcGGGCGUGGGCGCCagcGAGAccugcGGGa -3'
miRNA:   3'- aGCA-CUCGCACUUGCGG---CUCUu----CCCg -5'
25045 5' -55.1 NC_005336.1 + 118026 0.71 0.723234
Target:  5'- cCG-GuGCGUGAGCGCCGuuuacguGAAGGcGUu -3'
miRNA:   3'- aGCaCuCGCACUUGCGGCu------CUUCC-CG- -5'
25045 5' -55.1 NC_005336.1 + 45485 0.71 0.723234
Target:  5'- ---cGAGgGUG-AUGCCGucGAAGGGCg -3'
miRNA:   3'- agcaCUCgCACuUGCGGCu-CUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 64378 0.7 0.73312
Target:  5'- cCGUGcGGCa-GAcCGCCGAGAcaguGGGGCa -3'
miRNA:   3'- aGCAC-UCGcaCUuGCGGCUCU----UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 41109 0.7 0.73312
Target:  5'- ---cGcGCGUGAugACGgaCGAGAAGGGCg -3'
miRNA:   3'- agcaCuCGCACU--UGCg-GCUCUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 43280 0.7 0.739988
Target:  5'- gUCGagGAGCGcgugcagcacuggaUGAGCGuguCCGAGAGcGGGCg -3'
miRNA:   3'- -AGCa-CUCGC--------------ACUUGC---GGCUCUU-CCCG- -5'
25045 5' -55.1 NC_005336.1 + 54975 0.7 0.742917
Target:  5'- aUCGUGAaguacuGCuccaUGAACGCCGAGGAGcaGGUc -3'
miRNA:   3'- -AGCACU------CGc---ACUUGCGGCUCUUC--CCG- -5'
25045 5' -55.1 NC_005336.1 + 93585 0.7 0.751652
Target:  5'- aCGUGcGCGUGAccACGCgCGAGGaccucguGGaGGCg -3'
miRNA:   3'- aGCACuCGCACU--UGCG-GCUCU-------UC-CCG- -5'
25045 5' -55.1 NC_005336.1 + 20257 0.7 0.752618
Target:  5'- cUGUG-GCGUGAuCGCCaGGGGcgcaggcuGGGGCu -3'
miRNA:   3'- aGCACuCGCACUuGCGG-CUCU--------UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 50050 0.7 0.752618
Target:  5'- aCGUGGGCG---ACGCgGAGAucGGCg -3'
miRNA:   3'- aGCACUCGCacuUGCGgCUCUucCCG- -5'
25045 5' -55.1 NC_005336.1 + 75220 0.7 0.770745
Target:  5'- gCGgaaGAgcuGCGUGAACuGCCGGGAcuugucgcggaugAGGGCc -3'
miRNA:   3'- aGCa--CU---CGCACUUG-CGGCUCU-------------UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 24131 0.7 0.771688
Target:  5'- ---cGGGCGUc-ACGUCGcAGAAGGGCa -3'
miRNA:   3'- agcaCUCGCAcuUGCGGC-UCUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 81378 0.7 0.775444
Target:  5'- gCGUGAgguucagcgagcaccGCGUGcAGCGCCGcGgcGGGUc -3'
miRNA:   3'- aGCACU---------------CGCAC-UUGCGGCuCuuCCCG- -5'
25045 5' -55.1 NC_005336.1 + 77949 0.7 0.781039
Target:  5'- gUCGUGcGCGagc-CGCCGGGcuGGGGCg -3'
miRNA:   3'- -AGCACuCGCacuuGCGGCUCu-UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 13283 0.7 0.781039
Target:  5'- aUGUGGGgGUuucGAgaaGCGCgGAGAcgAGGGCg -3'
miRNA:   3'- aGCACUCgCA---CU---UGCGgCUCU--UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 41080 0.7 0.781039
Target:  5'- gCGUGcacGCGcgccaGGAUGCUGuAGAAGGGCg -3'
miRNA:   3'- aGCACu--CGCa----CUUGCGGC-UCUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 82813 0.69 0.799329
Target:  5'- gUCGcGcGCGUGAugcgcACGCCGAGGgguucAGGuGCg -3'
miRNA:   3'- -AGCaCuCGCACU-----UGCGGCUCU-----UCC-CG- -5'
25045 5' -55.1 NC_005336.1 + 101746 0.69 0.799329
Target:  5'- cCGcGAGCGUGGACuuccucaaggaGCUGcuGGGGGCa -3'
miRNA:   3'- aGCaCUCGCACUUG-----------CGGCucUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 94812 0.69 0.80825
Target:  5'- ---aGAGCGaGGGCGCCGGGAAcugccaGGCg -3'
miRNA:   3'- agcaCUCGCaCUUGCGGCUCUUc-----CCG- -5'
25045 5' -55.1 NC_005336.1 + 54294 0.69 0.80825
Target:  5'- ---cGAGCGUGAGCGUCGAu---GGCg -3'
miRNA:   3'- agcaCUCGCACUUGCGGCUcuucCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.