miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25503 5' -58.9 NC_005337.1 + 76250 0.68 0.640811
Target:  5'- -gCGCACGGCCGUC-CCCGAaggUCg- -3'
miRNA:   3'- agGCGUGCUGGCGGaGGGCUca-AGag -5'
25503 5' -58.9 NC_005337.1 + 132996 0.68 0.640811
Target:  5'- cCCGC-CGAcCCGCCUCCgCGGGccaUCc -3'
miRNA:   3'- aGGCGuGCU-GGCGGAGG-GCUCaagAG- -5'
25503 5' -58.9 NC_005337.1 + 94865 0.68 0.647856
Target:  5'- cCCGCGCGugUcgaacagcGCCUccggaaaccgcucgCCCGAGUUCa- -3'
miRNA:   3'- aGGCGUGCugG--------CGGA--------------GGGCUCAAGag -5'
25503 5' -58.9 NC_005337.1 + 100114 0.68 0.649869
Target:  5'- aCCGCGacgUGACCGCCUucCCCGccaacguGGUgCUCg -3'
miRNA:   3'- aGGCGU---GCUGGCGGA--GGGC-------UCAaGAG- -5'
25503 5' -58.9 NC_005337.1 + 120636 0.68 0.650874
Target:  5'- cCCGCGCGucCUGCUUCCagaCGAGgugCUCu -3'
miRNA:   3'- aGGCGUGCu-GGCGGAGG---GCUCaa-GAG- -5'
25503 5' -58.9 NC_005337.1 + 10666 0.68 0.650874
Target:  5'- aCCGCGCGcCgGCCggcggCGGGUUCUCc -3'
miRNA:   3'- aGGCGUGCuGgCGGagg--GCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 127803 0.68 0.650874
Target:  5'- gUCCGCGCGcuggucACCGCCaCCaacuggGGGUUCUUc -3'
miRNA:   3'- -AGGCGUGC------UGGCGGaGGg-----CUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 34258 0.68 0.650874
Target:  5'- cUCCaGCACGGuCCGCg--CCGGGUUCUUg -3'
miRNA:   3'- -AGG-CGUGCU-GGCGgagGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 105285 0.68 0.650874
Target:  5'- cCUGgGCGGCCGCCgcugCCCGcAGUcgCUg -3'
miRNA:   3'- aGGCgUGCUGGCGGa---GGGC-UCAa-GAg -5'
25503 5' -58.9 NC_005337.1 + 49727 0.68 0.654896
Target:  5'- gCCGCGCGuucguuuccacagccGCCGCgUCCuCGGGgacCUCg -3'
miRNA:   3'- aGGCGUGC---------------UGGCGgAGG-GCUCaa-GAG- -5'
25503 5' -58.9 NC_005337.1 + 131445 0.68 0.660924
Target:  5'- cUCCGCGgaGGCCGCgCUcggCCUGGGcUUCUCc -3'
miRNA:   3'- -AGGCGUg-CUGGCG-GA---GGGCUC-AAGAG- -5'
25503 5' -58.9 NC_005337.1 + 133237 0.68 0.660924
Target:  5'- cCCGC-CGcCCGCCUCCCGcgcaaAGUgaaaUUCg -3'
miRNA:   3'- aGGCGuGCuGGCGGAGGGC-----UCAa---GAG- -5'
25503 5' -58.9 NC_005337.1 + 58456 0.68 0.660924
Target:  5'- aCCGCAUGACCuCCg-CCGAcgUCUCg -3'
miRNA:   3'- aGGCGUGCUGGcGGagGGCUcaAGAG- -5'
25503 5' -58.9 NC_005337.1 + 59738 0.68 0.660924
Target:  5'- gCCGCGCGGCggagcgCGUCUCCgCGAG--CUCg -3'
miRNA:   3'- aGGCGUGCUG------GCGGAGG-GCUCaaGAG- -5'
25503 5' -58.9 NC_005337.1 + 133237 0.68 0.660924
Target:  5'- cCCGC-CGcCCGCCUCCCGcgcaaAGUgaaaUUCg -3'
miRNA:   3'- aGGCGuGCuGGCGGAGGGC-----UCAa---GAG- -5'
25503 5' -58.9 NC_005337.1 + 80671 0.68 0.664937
Target:  5'- aUCUGCGCGGCgCGCUUCCgcgcgcgcaugugcgCGAggaaGUUCUCc -3'
miRNA:   3'- -AGGCGUGCUG-GCGGAGG---------------GCU----CAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 105795 0.68 0.679948
Target:  5'- gCCGCGCGGCCGCauccgugCUCCagGAG--CUCg -3'
miRNA:   3'- aGGCGUGCUGGCG-------GAGGg-CUCaaGAG- -5'
25503 5' -58.9 NC_005337.1 + 38366 0.68 0.680946
Target:  5'- -gCGCGCGGCCGCCgucgCCgCGAGc---- -3'
miRNA:   3'- agGCGUGCUGGCGGa---GG-GCUCaagag -5'
25503 5' -58.9 NC_005337.1 + 26116 0.68 0.680946
Target:  5'- aCCGCgGCGAucuCCGCCUCCagacGGUUgUCg -3'
miRNA:   3'- aGGCG-UGCU---GGCGGAGGgc--UCAAgAG- -5'
25503 5' -58.9 NC_005337.1 + 16693 0.68 0.680946
Target:  5'- cUCgCGCACGGCgGCCUCcgcugCCGGGUgacgCgUCa -3'
miRNA:   3'- -AG-GCGUGCUGgCGGAG-----GGCUCAa---G-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.