Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25507 | 3' | -54.4 | NC_005337.1 | + | 131131 | 1.11 | 0.002606 |
Target: 5'- aCAUCACUUGCAUCGACCGCGCGCUGGa -3' miRNA: 3'- -GUAGUGAACGUAGCUGGCGCGCGACC- -5' |
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25507 | 3' | -54.4 | NC_005337.1 | + | 85624 | 0.78 | 0.344346 |
Target: 5'- uCAUCACg-GCGUCcaGCUGCGCGCUGGc -3' miRNA: 3'- -GUAGUGaaCGUAGc-UGGCGCGCGACC- -5' |
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25507 | 3' | -54.4 | NC_005337.1 | + | 33586 | 0.77 | 0.402166 |
Target: 5'- --cCGCgucGCGUCGGCCGCGCGCgcGGc -3' miRNA: 3'- guaGUGaa-CGUAGCUGGCGCGCGa-CC- -5' |
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25507 | 3' | -54.4 | NC_005337.1 | + | 38981 | 0.76 | 0.465784 |
Target: 5'- --gCGCgUGCGUcacCGGCCGgGCGCUGGg -3' miRNA: 3'- guaGUGaACGUA---GCUGGCgCGCGACC- -5' |
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25507 | 3' | -54.4 | NC_005337.1 | + | 99649 | 0.75 | 0.524213 |
Target: 5'- aCGUgCGCg-GCAUCG-CCGCGCgGCUGGg -3' miRNA: 3'- -GUA-GUGaaCGUAGCuGGCGCG-CGACC- -5' |
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25507 | 3' | -54.4 | NC_005337.1 | + | 120451 | 0.74 | 0.544323 |
Target: 5'- aGUCcCUgcgggGCGcgcUCGAgCGCGCGCUGGa -3' miRNA: 3'- gUAGuGAa----CGU---AGCUgGCGCGCGACC- -5' |
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25507 | 3' | -54.4 | NC_005337.1 | + | 43559 | 0.74 | 0.564677 |
Target: 5'- --cCGC-UGCGacccCGACCGCGCGCUGa -3' miRNA: 3'- guaGUGaACGUa---GCUGGCGCGCGACc -5' |
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25507 | 3' | -54.4 | NC_005337.1 | + | 21516 | 0.73 | 0.595554 |
Target: 5'- gCGUUA-UUGCAgcagCGACCGCGCGCggcGGc -3' miRNA: 3'- -GUAGUgAACGUa---GCUGGCGCGCGa--CC- -5' |
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25507 | 3' | -54.4 | NC_005337.1 | + | 122867 | 0.73 | 0.595554 |
Target: 5'- --cCGCUguccGUGUCGGCCGCGCGCa-- -3' miRNA: 3'- guaGUGAa---CGUAGCUGGCGCGCGacc -5' |
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25507 | 3' | -54.4 | NC_005337.1 | + | 43318 | 0.72 | 0.688812 |
Target: 5'- aCGUCACguacUGC-UCGgggcucGCCGaCGCGCUGGc -3' miRNA: 3'- -GUAGUGa---ACGuAGC------UGGC-GCGCGACC- -5' |
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25507 | 3' | -54.4 | NC_005337.1 | + | 23087 | 0.72 | 0.688812 |
Target: 5'- ---uGCccgGCAUCGugCGCGCGgUGGu -3' miRNA: 3'- guagUGaa-CGUAGCugGCGCGCgACC- -5' |
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25507 | 3' | -54.4 | NC_005337.1 | + | 119953 | 0.71 | 0.729381 |
Target: 5'- aCAUCaACgaGCGgaaccUCGAgCGCGCGCUGa -3' miRNA: 3'- -GUAG-UGaaCGU-----AGCUgGCGCGCGACc -5' |
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25507 | 3' | -54.4 | NC_005337.1 | + | 86658 | 0.71 | 0.73933 |
Target: 5'- aCGUgGCUUucaGCG-CGGCCGCGCGCgcGGc -3' miRNA: 3'- -GUAgUGAA---CGUaGCUGGCGCGCGa-CC- -5' |
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25507 | 3' | -54.4 | NC_005337.1 | + | 74932 | 0.7 | 0.749183 |
Target: 5'- -uUCGCgcGCG-CGGCCGCGCggaugcgguGCUGGg -3' miRNA: 3'- guAGUGaaCGUaGCUGGCGCG---------CGACC- -5' |
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25507 | 3' | -54.4 | NC_005337.1 | + | 68126 | 0.7 | 0.749183 |
Target: 5'- gGUCGCgggGCcggUGGCCGCGCGCg-- -3' miRNA: 3'- gUAGUGaa-CGua-GCUGGCGCGCGacc -5' |
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25507 | 3' | -54.4 | NC_005337.1 | + | 103108 | 0.7 | 0.752119 |
Target: 5'- aCAUCGaccucccggagugcgGCAUCGugCGCGCGCUc- -3' miRNA: 3'- -GUAGUgaa------------CGUAGCugGCGCGCGAcc -5' |
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25507 | 3' | -54.4 | NC_005337.1 | + | 133635 | 0.7 | 0.75893 |
Target: 5'- cCGUCGCcgUGCAggaCG-UCGcCGCGCUGGa -3' miRNA: 3'- -GUAGUGa-ACGUa--GCuGGC-GCGCGACC- -5' |
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25507 | 3' | -54.4 | NC_005337.1 | + | 133635 | 0.7 | 0.75893 |
Target: 5'- cCGUCGCcgUGCAggaCG-UCGcCGCGCUGGa -3' miRNA: 3'- -GUAGUGa-ACGUa--GCuGGC-GCGCGACC- -5' |
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25507 | 3' | -54.4 | NC_005337.1 | + | 50471 | 0.7 | 0.791147 |
Target: 5'- gGUCACcgagagcGCAUCaGACCGCGUcaacaucaagcgggaGCUGGa -3' miRNA: 3'- gUAGUGaa-----CGUAG-CUGGCGCG---------------CGACC- -5' |
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25507 | 3' | -54.4 | NC_005337.1 | + | 130117 | 0.69 | 0.805738 |
Target: 5'- gCAUCACggcucUGUGUCGcguacgugguCgCGCGCGCUGGc -3' miRNA: 3'- -GUAGUGa----ACGUAGCu---------G-GCGCGCGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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