miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25507 3' -54.4 NC_005337.1 + 11084 0.69 0.81465
Target:  5'- gGUCGCc-GCcgCGACCGCa-GCUGGa -3'
miRNA:   3'- gUAGUGaaCGuaGCUGGCGcgCGACC- -5'
25507 3' -54.4 NC_005337.1 + 1555 0.69 0.82339
Target:  5'- --cCGCUUG-AUC-ACCGCGCGCaUGGc -3'
miRNA:   3'- guaGUGAACgUAGcUGGCGCGCG-ACC- -5'
25507 3' -54.4 NC_005337.1 + 101181 0.69 0.831951
Target:  5'- --aCACaggGCAgcgGGCCGCGuCGCUGGu -3'
miRNA:   3'- guaGUGaa-CGUag-CUGGCGC-GCGACC- -5'
25507 3' -54.4 NC_005337.1 + 38317 0.69 0.840325
Target:  5'- gCGUCGagcGCAaCGACCGaCGCGuCUGGc -3'
miRNA:   3'- -GUAGUgaaCGUaGCUGGC-GCGC-GACC- -5'
25507 3' -54.4 NC_005337.1 + 96628 0.69 0.840325
Target:  5'- cCAUCGCggUGaagccCGACCGCGgCGcCUGGa -3'
miRNA:   3'- -GUAGUGa-ACgua--GCUGGCGC-GC-GACC- -5'
25507 3' -54.4 NC_005337.1 + 91914 0.69 0.840325
Target:  5'- gGUCACgacgUGCGUCG-CCGCGUGg--- -3'
miRNA:   3'- gUAGUGa---ACGUAGCuGGCGCGCgacc -5'
25507 3' -54.4 NC_005337.1 + 94309 0.69 0.840325
Target:  5'- cCGUCGCgcucgaaUGCGUCGAgcgcCCGCGCGa-GGc -3'
miRNA:   3'- -GUAGUGa------ACGUAGCU----GGCGCGCgaCC- -5'
25507 3' -54.4 NC_005337.1 + 132931 0.68 0.848503
Target:  5'- cCGUCACcuuCggCGACCcgcucugcaGCGCGCUGGa -3'
miRNA:   3'- -GUAGUGaacGuaGCUGG---------CGCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 55500 0.68 0.864246
Target:  5'- gAUCGCUcGCAUgGA-CGUGCGCUucGGg -3'
miRNA:   3'- gUAGUGAaCGUAgCUgGCGCGCGA--CC- -5'
25507 3' -54.4 NC_005337.1 + 97649 0.68 0.864246
Target:  5'- aGUCGC-UGCGcUCGGUCGCGCGCg-- -3'
miRNA:   3'- gUAGUGaACGU-AGCUGGCGCGCGacc -5'
25507 3' -54.4 NC_005337.1 + 39136 0.68 0.871797
Target:  5'- -cUCGCUcgUGCuuaUGACgGCGaCGCUGGa -3'
miRNA:   3'- guAGUGA--ACGua-GCUGgCGC-GCGACC- -5'
25507 3' -54.4 NC_005337.1 + 43814 0.68 0.876951
Target:  5'- gGUCGCUcaucaccuccacgcUGCAgcgggcCGGCgGCGCGgUGGa -3'
miRNA:   3'- gUAGUGA--------------ACGUa-----GCUGgCGCGCgACC- -5'
25507 3' -54.4 NC_005337.1 + 12266 0.68 0.879126
Target:  5'- cCGUCGCggccGgGUCGcaccCCGCGCGCaGGa -3'
miRNA:   3'- -GUAGUGaa--CgUAGCu---GGCGCGCGaCC- -5'
25507 3' -54.4 NC_005337.1 + 4581 0.68 0.879126
Target:  5'- --cCGCggGCGcggCGACUGCGCguGCUGGu -3'
miRNA:   3'- guaGUGaaCGUa--GCUGGCGCG--CGACC- -5'
25507 3' -54.4 NC_005337.1 + 130021 0.68 0.879126
Target:  5'- aAUCACgcgGCcgCGGUCGcCGCGCUGa -3'
miRNA:   3'- gUAGUGaa-CGuaGCUGGC-GCGCGACc -5'
25507 3' -54.4 NC_005337.1 + 3460 0.68 0.879126
Target:  5'- gAUCACggcgGCAcugggucgucgCGACUGCGCguGCUGGu -3'
miRNA:   3'- gUAGUGaa--CGUa----------GCUGGCGCG--CGACC- -5'
25507 3' -54.4 NC_005337.1 + 94744 0.68 0.879126
Target:  5'- --gCGCcgGCAgccaCGACCGCGaGCUGGc -3'
miRNA:   3'- guaGUGaaCGUa---GCUGGCGCgCGACC- -5'
25507 3' -54.4 NC_005337.1 + 101226 0.68 0.879126
Target:  5'- gGUCGCggagGCGUCcGCgCGCgugcucGCGCUGGa -3'
miRNA:   3'- gUAGUGaa--CGUAGcUG-GCG------CGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 55917 0.67 0.891744
Target:  5'- gCGUCACgcUGCccaccuucgaGACCGCGCcccgGCUGGa -3'
miRNA:   3'- -GUAGUGa-ACGuag-------CUGGCGCG----CGACC- -5'
25507 3' -54.4 NC_005337.1 + 127790 0.67 0.893099
Target:  5'- gAUCGaccuCcUCGuCCGCGCGCUGGu -3'
miRNA:   3'- gUAGUgaacGuAGCuGGCGCGCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.