miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25507 3' -54.4 NC_005337.1 + 38317 0.69 0.840325
Target:  5'- gCGUCGagcGCAaCGACCGaCGCGuCUGGc -3'
miRNA:   3'- -GUAGUgaaCGUaGCUGGC-GCGC-GACC- -5'
25507 3' -54.4 NC_005337.1 + 38981 0.76 0.465784
Target:  5'- --gCGCgUGCGUcacCGGCCGgGCGCUGGg -3'
miRNA:   3'- guaGUGaACGUA---GCUGGCgCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 39136 0.68 0.871797
Target:  5'- -cUCGCUcgUGCuuaUGACgGCGaCGCUGGa -3'
miRNA:   3'- guAGUGA--ACGua-GCUGgCGC-GCGACC- -5'
25507 3' -54.4 NC_005337.1 + 43318 0.72 0.688812
Target:  5'- aCGUCACguacUGC-UCGgggcucGCCGaCGCGCUGGc -3'
miRNA:   3'- -GUAGUGa---ACGuAGC------UGGC-GCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 43559 0.74 0.564677
Target:  5'- --cCGC-UGCGacccCGACCGCGCGCUGa -3'
miRNA:   3'- guaGUGaACGUa---GCUGGCGCGCGACc -5'
25507 3' -54.4 NC_005337.1 + 43814 0.68 0.876951
Target:  5'- gGUCGCUcaucaccuccacgcUGCAgcgggcCGGCgGCGCGgUGGa -3'
miRNA:   3'- gUAGUGA--------------ACGUa-----GCUGgCGCGCgACC- -5'
25507 3' -54.4 NC_005337.1 + 45525 0.67 0.918193
Target:  5'- gGUC-CUcgGCGUCGggaGCCG-GUGCUGGa -3'
miRNA:   3'- gUAGuGAa-CGUAGC---UGGCgCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 47996 0.66 0.934444
Target:  5'- gCcgCACUgcgugGCcUgGAuCCGCGCGCUGcGg -3'
miRNA:   3'- -GuaGUGAa----CGuAgCU-GGCGCGCGAC-C- -5'
25507 3' -54.4 NC_005337.1 + 50471 0.7 0.791147
Target:  5'- gGUCACcgagagcGCAUCaGACCGCGUcaacaucaagcgggaGCUGGa -3'
miRNA:   3'- gUAGUGaa-----CGUAG-CUGGCGCG---------------CGACC- -5'
25507 3' -54.4 NC_005337.1 + 50761 0.66 0.929273
Target:  5'- --aCGCgcGCAUCGACCuCGCGCc-- -3'
miRNA:   3'- guaGUGaaCGUAGCUGGcGCGCGacc -5'
25507 3' -54.4 NC_005337.1 + 54128 0.67 0.918193
Target:  5'- --gCGCgacgGCcgCG-CCGCGCGCaUGGc -3'
miRNA:   3'- guaGUGaa--CGuaGCuGGCGCGCG-ACC- -5'
25507 3' -54.4 NC_005337.1 + 55500 0.68 0.864246
Target:  5'- gAUCGCUcGCAUgGA-CGUGCGCUucGGg -3'
miRNA:   3'- gUAGUGAaCGUAgCUgGCGCGCGA--CC- -5'
25507 3' -54.4 NC_005337.1 + 55917 0.67 0.891744
Target:  5'- gCGUCACgcUGCccaccuucgaGACCGCGCcccgGCUGGa -3'
miRNA:   3'- -GUAGUGa-ACGuag-------CUGGCGCG----CGACC- -5'
25507 3' -54.4 NC_005337.1 + 59339 0.67 0.912284
Target:  5'- aCcgCAUccGCG-CGGCCGCGCGCg-- -3'
miRNA:   3'- -GuaGUGaaCGUaGCUGGCGCGCGacc -5'
25507 3' -54.4 NC_005337.1 + 65515 0.67 0.90613
Target:  5'- --gUACUcgaUGCGgugCGGCCG-GUGCUGGa -3'
miRNA:   3'- guaGUGA---ACGUa--GCUGGCgCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 67320 0.67 0.893099
Target:  5'- cCAUgGCgcGC-UCGAUCGCGCGCgcguccgGGu -3'
miRNA:   3'- -GUAgUGaaCGuAGCUGGCGCGCGa------CC- -5'
25507 3' -54.4 NC_005337.1 + 67956 0.66 0.939369
Target:  5'- uGUCGCcaGCccgCGACCGCgGCGCUc- -3'
miRNA:   3'- gUAGUGaaCGua-GCUGGCG-CGCGAcc -5'
25507 3' -54.4 NC_005337.1 + 68126 0.7 0.749183
Target:  5'- gGUCGCgggGCcggUGGCCGCGCGCg-- -3'
miRNA:   3'- gUAGUGaa-CGua-GCUGGCGCGCGacc -5'
25507 3' -54.4 NC_005337.1 + 74932 0.7 0.749183
Target:  5'- -uUCGCgcGCG-CGGCCGCGCggaugcgguGCUGGg -3'
miRNA:   3'- guAGUGaaCGUaGCUGGCGCG---------CGACC- -5'
25507 3' -54.4 NC_005337.1 + 75753 0.65 0.947618
Target:  5'- aCGUCACcaGCAUCGagggcgugauuccGCCGCucguuaaGCuGCUGGa -3'
miRNA:   3'- -GUAGUGaaCGUAGC-------------UGGCG-------CG-CGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.