miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25507 3' -54.4 NC_005337.1 + 1555 0.69 0.82339
Target:  5'- --cCGCUUG-AUC-ACCGCGCGCaUGGc -3'
miRNA:   3'- guaGUGAACgUAGcUGGCGCGCG-ACC- -5'
25507 3' -54.4 NC_005337.1 + 1882 0.67 0.912284
Target:  5'- gAUCGCggGCcggggccgGUaCGAcuCCGCGUGCUGGu -3'
miRNA:   3'- gUAGUGaaCG--------UA-GCU--GGCGCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 3460 0.68 0.879126
Target:  5'- gAUCACggcgGCAcugggucgucgCGACUGCGCguGCUGGu -3'
miRNA:   3'- gUAGUGaa--CGUa----------GCUGGCGCG--CGACC- -5'
25507 3' -54.4 NC_005337.1 + 4581 0.68 0.879126
Target:  5'- --cCGCggGCGcggCGACUGCGCguGCUGGu -3'
miRNA:   3'- guaGUGaaCGUa--GCUGGCGCG--CGACC- -5'
25507 3' -54.4 NC_005337.1 + 4742 0.67 0.90613
Target:  5'- gAUCACggacGC-UCGcGCCGCGCGCg-- -3'
miRNA:   3'- gUAGUGaa--CGuAGC-UGGCGCGCGacc -5'
25507 3' -54.4 NC_005337.1 + 8143 0.66 0.944048
Target:  5'- --aCGCcggGCAU-GGCCGCGCGCa-- -3'
miRNA:   3'- guaGUGaa-CGUAgCUGGCGCGCGacc -5'
25507 3' -54.4 NC_005337.1 + 9752 0.67 0.918193
Target:  5'- ---aGCgcGCGUCGGCCG-GCGCcGGg -3'
miRNA:   3'- guagUGaaCGUAGCUGGCgCGCGaCC- -5'
25507 3' -54.4 NC_005337.1 + 11084 0.69 0.81465
Target:  5'- gGUCGCc-GCcgCGACCGCa-GCUGGa -3'
miRNA:   3'- gUAGUGaaCGuaGCUGGCGcgCGACC- -5'
25507 3' -54.4 NC_005337.1 + 12266 0.68 0.879126
Target:  5'- cCGUCGCggccGgGUCGcaccCCGCGCGCaGGa -3'
miRNA:   3'- -GUAGUGaa--CgUAGCu---GGCGCGCGaCC- -5'
25507 3' -54.4 NC_005337.1 + 14411 0.66 0.929273
Target:  5'- gGUUguGCUUGCcgCGcgacguGCCGC-CGCUGGc -3'
miRNA:   3'- gUAG--UGAACGuaGC------UGGCGcGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 17033 0.67 0.910463
Target:  5'- --gCAC-UGCGUCGcguuCCGCGCggucugcacguuccGCUGGa -3'
miRNA:   3'- guaGUGaACGUAGCu---GGCGCG--------------CGACC- -5'
25507 3' -54.4 NC_005337.1 + 20309 0.67 0.899734
Target:  5'- gCAUCugU-GCAggCGGCguUGCGCGCUGc -3'
miRNA:   3'- -GUAGugAaCGUa-GCUG--GCGCGCGACc -5'
25507 3' -54.4 NC_005337.1 + 21516 0.73 0.595554
Target:  5'- gCGUUA-UUGCAgcagCGACCGCGCGCggcGGc -3'
miRNA:   3'- -GUAGUgAACGUa---GCUGGCGCGCGa--CC- -5'
25507 3' -54.4 NC_005337.1 + 23087 0.72 0.688812
Target:  5'- ---uGCccgGCAUCGugCGCGCGgUGGu -3'
miRNA:   3'- guagUGaa-CGUAGCugGCGCGCgACC- -5'
25507 3' -54.4 NC_005337.1 + 23908 0.66 0.923857
Target:  5'- uGUCGCUgccGCG-CGcCCGCGCGCc-- -3'
miRNA:   3'- gUAGUGAa--CGUaGCuGGCGCGCGacc -5'
25507 3' -54.4 NC_005337.1 + 33586 0.77 0.402166
Target:  5'- --cCGCgucGCGUCGGCCGCGCGCgcGGc -3'
miRNA:   3'- guaGUGaa-CGUAGCUGGCGCGCGa-CC- -5'
25507 3' -54.4 NC_005337.1 + 35718 0.66 0.923857
Target:  5'- cCGUCuACcggUGCGUgGACgGCGUGgUGGu -3'
miRNA:   3'- -GUAG-UGa--ACGUAgCUGgCGCGCgACC- -5'
25507 3' -54.4 NC_005337.1 + 36211 0.66 0.944048
Target:  5'- uCGUCGuuuUUUGCGcCGGCCGCgGCGCg-- -3'
miRNA:   3'- -GUAGU---GAACGUaGCUGGCG-CGCGacc -5'
25507 3' -54.4 NC_005337.1 + 36483 0.67 0.912284
Target:  5'- gCcgCACggccuugGCcgCGGCCGCgGCGCUcGGc -3'
miRNA:   3'- -GuaGUGaa-----CGuaGCUGGCG-CGCGA-CC- -5'
25507 3' -54.4 NC_005337.1 + 36797 0.67 0.90613
Target:  5'- --cCGCUggGCGUCaGCCGCGuCGCcGGu -3'
miRNA:   3'- guaGUGAa-CGUAGcUGGCGC-GCGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.