miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25507 3' -54.4 NC_005337.1 + 133635 0.7 0.75893
Target:  5'- cCGUCGCcgUGCAggaCG-UCGcCGCGCUGGa -3'
miRNA:   3'- -GUAGUGa-ACGUa--GCuGGC-GCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 133635 0.7 0.75893
Target:  5'- cCGUCGCcgUGCAggaCG-UCGcCGCGCUGGa -3'
miRNA:   3'- -GUAGUGa-ACGUa--GCuGGC-GCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 132931 0.68 0.848503
Target:  5'- cCGUCACcuuCggCGACCcgcucugcaGCGCGCUGGa -3'
miRNA:   3'- -GUAGUGaacGuaGCUGG---------CGCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 131904 0.66 0.923857
Target:  5'- --gCACguggacGCgGUCGACCggugcugcgGCGCGCUGGc -3'
miRNA:   3'- guaGUGaa----CG-UAGCUGG---------CGCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 131249 0.67 0.918193
Target:  5'- gGUCGCgcaCAUCGGCgCGCacGCGCUGc -3'
miRNA:   3'- gUAGUGaacGUAGCUG-GCG--CGCGACc -5'
25507 3' -54.4 NC_005337.1 + 131131 1.11 0.002606
Target:  5'- aCAUCACUUGCAUCGACCGCGCGCUGGa -3'
miRNA:   3'- -GUAGUGAACGUAGCUGGCGCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 130117 0.69 0.805738
Target:  5'- gCAUCACggcucUGUGUCGcguacgugguCgCGCGCGCUGGc -3'
miRNA:   3'- -GUAGUGa----ACGUAGCu---------G-GCGCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 130021 0.68 0.879126
Target:  5'- aAUCACgcgGCcgCGGUCGcCGCGCUGa -3'
miRNA:   3'- gUAGUGaa-CGuaGCUGGC-GCGCGACc -5'
25507 3' -54.4 NC_005337.1 + 127790 0.67 0.893099
Target:  5'- gAUCGaccuCcUCGuCCGCGCGCUGGu -3'
miRNA:   3'- gUAGUgaacGuAGCuGGCGCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 126436 0.66 0.944048
Target:  5'- --gCGCgcgUGCG-CGuguaccACCGCGCGCUGu -3'
miRNA:   3'- guaGUGa--ACGUaGC------UGGCGCGCGACc -5'
25507 3' -54.4 NC_005337.1 + 124423 0.66 0.923857
Target:  5'- gGUC-CUggGCAaCG-CCGCGCGCgGGu -3'
miRNA:   3'- gUAGuGAa-CGUaGCuGGCGCGCGaCC- -5'
25507 3' -54.4 NC_005337.1 + 123928 0.66 0.934444
Target:  5'- --cCGCUgcgGCGgcgaCGGCCGCGUGCa-- -3'
miRNA:   3'- guaGUGAa--CGUa---GCUGGCGCGCGacc -5'
25507 3' -54.4 NC_005337.1 + 122867 0.73 0.595554
Target:  5'- --cCGCUguccGUGUCGGCCGCGCGCa-- -3'
miRNA:   3'- guaGUGAa---CGUAGCUGGCGCGCGacc -5'
25507 3' -54.4 NC_005337.1 + 120451 0.74 0.544323
Target:  5'- aGUCcCUgcgggGCGcgcUCGAgCGCGCGCUGGa -3'
miRNA:   3'- gUAGuGAa----CGU---AGCUgGCGCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 119953 0.71 0.729381
Target:  5'- aCAUCaACgaGCGgaaccUCGAgCGCGCGCUGa -3'
miRNA:   3'- -GUAG-UGaaCGU-----AGCUgGCGCGCGACc -5'
25507 3' -54.4 NC_005337.1 + 108747 0.66 0.923857
Target:  5'- -cUCGCggcGCGUgGGCCGCuGC-CUGGa -3'
miRNA:   3'- guAGUGaa-CGUAgCUGGCG-CGcGACC- -5'
25507 3' -54.4 NC_005337.1 + 105667 0.67 0.905501
Target:  5'- cCGUCACUguccucgUGCGUCcaGACgCGgugGCGCUGGu -3'
miRNA:   3'- -GUAGUGA-------ACGUAG--CUG-GCg--CGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 105353 0.66 0.944048
Target:  5'- ---gGCUccCGUCGAUCGCGUGCUuGGu -3'
miRNA:   3'- guagUGAacGUAGCUGGCGCGCGA-CC- -5'
25507 3' -54.4 NC_005337.1 + 103242 0.67 0.90613
Target:  5'- --cCGCUggUGCG-CGcCCGCGCGgUGGc -3'
miRNA:   3'- guaGUGA--ACGUaGCuGGCGCGCgACC- -5'
25507 3' -54.4 NC_005337.1 + 103108 0.7 0.752119
Target:  5'- aCAUCGaccucccggagugcgGCAUCGugCGCGCGCUc- -3'
miRNA:   3'- -GUAGUgaa------------CGUAGCugGCGCGCGAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.