miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25507 3' -54.4 NC_005337.1 + 74932 0.7 0.749183
Target:  5'- -uUCGCgcGCG-CGGCCGCGCggaugcgguGCUGGg -3'
miRNA:   3'- guAGUGaaCGUaGCUGGCGCG---------CGACC- -5'
25507 3' -54.4 NC_005337.1 + 68126 0.7 0.749183
Target:  5'- gGUCGCgggGCcggUGGCCGCGCGCg-- -3'
miRNA:   3'- gUAGUGaa-CGua-GCUGGCGCGCGacc -5'
25507 3' -54.4 NC_005337.1 + 133635 0.7 0.75893
Target:  5'- cCGUCGCcgUGCAggaCG-UCGcCGCGCUGGa -3'
miRNA:   3'- -GUAGUGa-ACGUa--GCuGGC-GCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 130117 0.69 0.805738
Target:  5'- gCAUCACggcucUGUGUCGcguacgugguCgCGCGCGCUGGc -3'
miRNA:   3'- -GUAGUGa----ACGUAGCu---------G-GCGCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 11084 0.69 0.81465
Target:  5'- gGUCGCc-GCcgCGACCGCa-GCUGGa -3'
miRNA:   3'- gUAGUGaaCGuaGCUGGCGcgCGACC- -5'
25507 3' -54.4 NC_005337.1 + 94744 0.68 0.879126
Target:  5'- --gCGCcgGCAgccaCGACCGCGaGCUGGc -3'
miRNA:   3'- guaGUGaaCGUa---GCUGGCGCgCGACC- -5'
25507 3' -54.4 NC_005337.1 + 3460 0.68 0.879126
Target:  5'- gAUCACggcgGCAcugggucgucgCGACUGCGCguGCUGGu -3'
miRNA:   3'- gUAGUGaa--CGUa----------GCUGGCGCG--CGACC- -5'
25507 3' -54.4 NC_005337.1 + 43814 0.68 0.876951
Target:  5'- gGUCGCUcaucaccuccacgcUGCAgcgggcCGGCgGCGCGgUGGa -3'
miRNA:   3'- gUAGUGA--------------ACGUa-----GCUGgCGCGCgACC- -5'
25507 3' -54.4 NC_005337.1 + 39136 0.68 0.871797
Target:  5'- -cUCGCUcgUGCuuaUGACgGCGaCGCUGGa -3'
miRNA:   3'- guAGUGA--ACGua-GCUGgCGC-GCGACC- -5'
25507 3' -54.4 NC_005337.1 + 38317 0.69 0.840325
Target:  5'- gCGUCGagcGCAaCGACCGaCGCGuCUGGc -3'
miRNA:   3'- -GUAGUgaaCGUaGCUGGC-GCGC-GACC- -5'
25507 3' -54.4 NC_005337.1 + 1555 0.69 0.82339
Target:  5'- --cCGCUUG-AUC-ACCGCGCGCaUGGc -3'
miRNA:   3'- guaGUGAACgUAGcUGGCGCGCG-ACC- -5'
25507 3' -54.4 NC_005337.1 + 119953 0.71 0.729381
Target:  5'- aCAUCaACgaGCGgaaccUCGAgCGCGCGCUGa -3'
miRNA:   3'- -GUAG-UGaaCGU-----AGCUgGCGCGCGACc -5'
25507 3' -54.4 NC_005337.1 + 43318 0.72 0.688812
Target:  5'- aCGUCACguacUGC-UCGgggcucGCCGaCGCGCUGGc -3'
miRNA:   3'- -GUAGUGa---ACGuAGC------UGGC-GCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 122867 0.73 0.595554
Target:  5'- --cCGCUguccGUGUCGGCCGCGCGCa-- -3'
miRNA:   3'- guaGUGAa---CGUAGCUGGCGCGCGacc -5'
25507 3' -54.4 NC_005337.1 + 43559 0.74 0.564677
Target:  5'- --cCGC-UGCGacccCGACCGCGCGCUGa -3'
miRNA:   3'- guaGUGaACGUa---GCUGGCGCGCGACc -5'
25507 3' -54.4 NC_005337.1 + 120451 0.74 0.544323
Target:  5'- aGUCcCUgcgggGCGcgcUCGAgCGCGCGCUGGa -3'
miRNA:   3'- gUAGuGAa----CGU---AGCUgGCGCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 38981 0.76 0.465784
Target:  5'- --gCGCgUGCGUcacCGGCCGgGCGCUGGg -3'
miRNA:   3'- guaGUGaACGUA---GCUGGCgCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 33586 0.77 0.402166
Target:  5'- --cCGCgucGCGUCGGCCGCGCGCgcGGc -3'
miRNA:   3'- guaGUGaa-CGUAGCUGGCGCGCGa-CC- -5'
25507 3' -54.4 NC_005337.1 + 85624 0.78 0.344346
Target:  5'- uCAUCACg-GCGUCcaGCUGCGCGCUGGc -3'
miRNA:   3'- -GUAGUGaaCGUAGc-UGGCGCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 75753 0.65 0.947618
Target:  5'- aCGUCACcaGCAUCGagggcgugauuccGCCGCucguuaaGCuGCUGGa -3'
miRNA:   3'- -GUAGUGaaCGUAGC-------------UGGCG-------CG-CGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.