miRNA display CGI


Results 21 - 40 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25507 3' -54.4 NC_005337.1 + 101500 0.66 0.923857
Target:  5'- --gCGCUcaUGCG-CGAgcgcuCCGCGCgGCUGGa -3'
miRNA:   3'- guaGUGA--ACGUaGCU-----GGCGCG-CGACC- -5'
25507 3' -54.4 NC_005337.1 + 82173 0.66 0.923857
Target:  5'- cCGUCGCgcaccUGCAcgCGGCCGCcggGCGCgcacGGc -3'
miRNA:   3'- -GUAGUGa----ACGUa-GCUGGCG---CGCGa---CC- -5'
25507 3' -54.4 NC_005337.1 + 9752 0.67 0.918193
Target:  5'- ---aGCgcGCGUCGGCCG-GCGCcGGg -3'
miRNA:   3'- guagUGaaCGUAGCUGGCgCGCGaCC- -5'
25507 3' -54.4 NC_005337.1 + 45525 0.67 0.918193
Target:  5'- gGUC-CUcgGCGUCGggaGCCG-GUGCUGGa -3'
miRNA:   3'- gUAGuGAa-CGUAGC---UGGCgCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 54128 0.67 0.918193
Target:  5'- --gCGCgacgGCcgCG-CCGCGCGCaUGGc -3'
miRNA:   3'- guaGUGaa--CGuaGCuGGCGCGCG-ACC- -5'
25507 3' -54.4 NC_005337.1 + 131249 0.67 0.918193
Target:  5'- gGUCGCgcaCAUCGGCgCGCacGCGCUGc -3'
miRNA:   3'- gUAGUGaacGUAGCUG-GCG--CGCGACc -5'
25507 3' -54.4 NC_005337.1 + 1882 0.67 0.912284
Target:  5'- gAUCGCggGCcggggccgGUaCGAcuCCGCGUGCUGGu -3'
miRNA:   3'- gUAGUGaaCG--------UA-GCU--GGCGCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 59339 0.67 0.912284
Target:  5'- aCcgCAUccGCG-CGGCCGCGCGCg-- -3'
miRNA:   3'- -GuaGUGaaCGUaGCUGGCGCGCGacc -5'
25507 3' -54.4 NC_005337.1 + 36483 0.67 0.912284
Target:  5'- gCcgCACggccuugGCcgCGGCCGCgGCGCUcGGc -3'
miRNA:   3'- -GuaGUGaa-----CGuaGCUGGCG-CGCGA-CC- -5'
25507 3' -54.4 NC_005337.1 + 95964 0.67 0.912284
Target:  5'- gGUCG-UUGCGcUCGACgCGCGCGCc-- -3'
miRNA:   3'- gUAGUgAACGU-AGCUG-GCGCGCGacc -5'
25507 3' -54.4 NC_005337.1 + 17033 0.67 0.910463
Target:  5'- --gCAC-UGCGUCGcguuCCGCGCggucugcacguuccGCUGGa -3'
miRNA:   3'- guaGUGaACGUAGCu---GGCGCG--------------CGACC- -5'
25507 3' -54.4 NC_005337.1 + 4742 0.67 0.90613
Target:  5'- gAUCACggacGC-UCGcGCCGCGCGCg-- -3'
miRNA:   3'- gUAGUGaa--CGuAGC-UGGCGCGCGacc -5'
25507 3' -54.4 NC_005337.1 + 103242 0.67 0.90613
Target:  5'- --cCGCUggUGCG-CGcCCGCGCGgUGGc -3'
miRNA:   3'- guaGUGA--ACGUaGCuGGCGCGCgACC- -5'
25507 3' -54.4 NC_005337.1 + 65515 0.67 0.90613
Target:  5'- --gUACUcgaUGCGgugCGGCCG-GUGCUGGa -3'
miRNA:   3'- guaGUGA---ACGUa--GCUGGCgCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 36797 0.67 0.90613
Target:  5'- --cCGCUggGCGUCaGCCGCGuCGCcGGu -3'
miRNA:   3'- guaGUGAa-CGUAGcUGGCGC-GCGaCC- -5'
25507 3' -54.4 NC_005337.1 + 105667 0.67 0.905501
Target:  5'- cCGUCACUguccucgUGCGUCcaGACgCGgugGCGCUGGu -3'
miRNA:   3'- -GUAGUGA-------ACGUAG--CUG-GCg--CGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 20309 0.67 0.899734
Target:  5'- gCAUCugU-GCAggCGGCguUGCGCGCUGc -3'
miRNA:   3'- -GUAGugAaCGUa-GCUG--GCGCGCGACc -5'
25507 3' -54.4 NC_005337.1 + 89850 0.67 0.899734
Target:  5'- -uUCACggccucgagcUGCuucucCGAgCGCGCGCUGGc -3'
miRNA:   3'- guAGUGa---------ACGua---GCUgGCGCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 95909 0.67 0.899734
Target:  5'- -cUCGCg-GCGacggCGGCCGCGCGCg-- -3'
miRNA:   3'- guAGUGaaCGUa---GCUGGCGCGCGacc -5'
25507 3' -54.4 NC_005337.1 + 67320 0.67 0.893099
Target:  5'- cCAUgGCgcGC-UCGAUCGCGCGCgcguccgGGu -3'
miRNA:   3'- -GUAgUGaaCGuAGCUGGCGCGCGa------CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.