miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25507 3' -54.4 NC_005337.1 + 131131 1.11 0.002606
Target:  5'- aCAUCACUUGCAUCGACCGCGCGCUGGa -3'
miRNA:   3'- -GUAGUGAACGUAGCUGGCGCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 132931 0.68 0.848503
Target:  5'- cCGUCACcuuCggCGACCcgcucugcaGCGCGCUGGa -3'
miRNA:   3'- -GUAGUGaacGuaGCUGG---------CGCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 97649 0.68 0.864246
Target:  5'- aGUCGC-UGCGcUCGGUCGCGCGCg-- -3'
miRNA:   3'- gUAGUGaACGU-AGCUGGCGCGCGacc -5'
25507 3' -54.4 NC_005337.1 + 75753 0.65 0.947618
Target:  5'- aCGUCACcaGCAUCGagggcgugauuccGCCGCucguuaaGCuGCUGGa -3'
miRNA:   3'- -GUAGUGaaCGUAGC-------------UGGCG-------CG-CGACC- -5'
25507 3' -54.4 NC_005337.1 + 120451 0.74 0.544323
Target:  5'- aGUCcCUgcgggGCGcgcUCGAgCGCGCGCUGGa -3'
miRNA:   3'- gUAGuGAa----CGU---AGCUgGCGCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 43559 0.74 0.564677
Target:  5'- --cCGC-UGCGacccCGACCGCGCGCUGa -3'
miRNA:   3'- guaGUGaACGUa---GCUGGCGCGCGACc -5'
25507 3' -54.4 NC_005337.1 + 43318 0.72 0.688812
Target:  5'- aCGUCACguacUGC-UCGgggcucGCCGaCGCGCUGGc -3'
miRNA:   3'- -GUAGUGa---ACGuAGC------UGGC-GCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 119953 0.71 0.729381
Target:  5'- aCAUCaACgaGCGgaaccUCGAgCGCGCGCUGa -3'
miRNA:   3'- -GUAG-UGaaCGU-----AGCUgGCGCGCGACc -5'
25507 3' -54.4 NC_005337.1 + 133635 0.7 0.75893
Target:  5'- cCGUCGCcgUGCAggaCG-UCGcCGCGCUGGa -3'
miRNA:   3'- -GUAGUGa-ACGUa--GCuGGC-GCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 94309 0.69 0.840325
Target:  5'- cCGUCGCgcucgaaUGCGUCGAgcgcCCGCGCGa-GGc -3'
miRNA:   3'- -GUAGUGa------ACGUAGCU----GGCGCGCgaCC- -5'
25507 3' -54.4 NC_005337.1 + 101181 0.69 0.831951
Target:  5'- --aCACaggGCAgcgGGCCGCGuCGCUGGu -3'
miRNA:   3'- guaGUGaa-CGUag-CUGGCGC-GCGACC- -5'
25507 3' -54.4 NC_005337.1 + 103108 0.7 0.752119
Target:  5'- aCAUCGaccucccggagugcgGCAUCGugCGCGCGCUc- -3'
miRNA:   3'- -GUAGUgaa------------CGUAGCugGCGCGCGAcc -5'
25507 3' -54.4 NC_005337.1 + 85624 0.78 0.344346
Target:  5'- uCAUCACg-GCGUCcaGCUGCGCGCUGGc -3'
miRNA:   3'- -GUAGUGaaCGUAGc-UGGCGCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 91914 0.69 0.840325
Target:  5'- gGUCACgacgUGCGUCG-CCGCGUGg--- -3'
miRNA:   3'- gUAGUGa---ACGUAGCuGGCGCGCgacc -5'
25507 3' -54.4 NC_005337.1 + 33586 0.77 0.402166
Target:  5'- --cCGCgucGCGUCGGCCGCGCGCgcGGc -3'
miRNA:   3'- guaGUGaa-CGUAGCUGGCGCGCGa-CC- -5'
25507 3' -54.4 NC_005337.1 + 86658 0.71 0.73933
Target:  5'- aCGUgGCUUucaGCG-CGGCCGCGCGCgcGGc -3'
miRNA:   3'- -GUAgUGAA---CGUaGCUGGCGCGCGa-CC- -5'
25507 3' -54.4 NC_005337.1 + 96628 0.69 0.840325
Target:  5'- cCAUCGCggUGaagccCGACCGCGgCGcCUGGa -3'
miRNA:   3'- -GUAGUGa-ACgua--GCUGGCGC-GC-GACC- -5'
25507 3' -54.4 NC_005337.1 + 55500 0.68 0.864246
Target:  5'- gAUCGCUcGCAUgGA-CGUGCGCUucGGg -3'
miRNA:   3'- gUAGUGAaCGUAgCUgGCGCGCGA--CC- -5'
25507 3' -54.4 NC_005337.1 + 38981 0.76 0.465784
Target:  5'- --gCGCgUGCGUcacCGGCCGgGCGCUGGg -3'
miRNA:   3'- guaGUGaACGUA---GCUGGCgCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 122867 0.73 0.595554
Target:  5'- --cCGCUguccGUGUCGGCCGCGCGCa-- -3'
miRNA:   3'- guaGUGAa---CGUAGCUGGCGCGCGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.