miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 5' -53.2 NC_005337.1 + 3005 0.66 0.965574
Target:  5'- uGGCgGAcGGGcUCCGgcagcgCGUGCGCGCc -3'
miRNA:   3'- cCCGgUU-CCUuAGGUa-----GUACGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 38653 0.66 0.965574
Target:  5'- cGGGCCcgcgcccacGGAcgCCGcCAUgGCGCGCu -3'
miRNA:   3'- -CCCGGuu-------CCUuaGGUaGUA-CGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 90188 0.66 0.965574
Target:  5'- aGGCCGGGGAagaagucgcAUCCGUUugucaGCGC-CGc -3'
miRNA:   3'- cCCGGUUCCU---------UAGGUAGua---CGCGuGC- -5'
25510 5' -53.2 NC_005337.1 + 11389 0.66 0.965574
Target:  5'- -cGCCgAAGucGUUCAgCGUGCGCGCGg -3'
miRNA:   3'- ccCGG-UUCcuUAGGUaGUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 107262 0.66 0.965574
Target:  5'- uGGCCGGGGAgcacAUCCGcuUCcgGCuGC-CGg -3'
miRNA:   3'- cCCGGUUCCU----UAGGU--AGuaCG-CGuGC- -5'
25510 5' -53.2 NC_005337.1 + 88573 0.66 0.962146
Target:  5'- cGGGCCGGGGGuUCCg----GCuCACGg -3'
miRNA:   3'- -CCCGGUUCCUuAGGuaguaCGcGUGC- -5'
25510 5' -53.2 NC_005337.1 + 2427 0.66 0.962146
Target:  5'- gGGGUCGGGG---CCGUCGUaGUGCAgGu -3'
miRNA:   3'- -CCCGGUUCCuuaGGUAGUA-CGCGUgC- -5'
25510 5' -53.2 NC_005337.1 + 34041 0.66 0.958487
Target:  5'- cGGGC--GGGAccgCgAUCAcGCGCACGc -3'
miRNA:   3'- -CCCGguUCCUua-GgUAGUaCGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 98492 0.66 0.958487
Target:  5'- -cGCCGGcGGcGUCCGUCAUGacaCGCGCc -3'
miRNA:   3'- ccCGGUU-CCuUAGGUAGUAC---GCGUGc -5'
25510 5' -53.2 NC_005337.1 + 6640 0.66 0.958109
Target:  5'- cGGCgGAGGAcaugagcagaagAUCCAgcggCGUGCacccacaGCACGa -3'
miRNA:   3'- cCCGgUUCCU------------UAGGUa---GUACG-------CGUGC- -5'
25510 5' -53.2 NC_005337.1 + 102851 0.66 0.958109
Target:  5'- cGGGCCGcgcgccAGGAagugcauGUUCGUCAuggacaugaUGCGcCGCGa -3'
miRNA:   3'- -CCCGGU------UCCU-------UAGGUAGU---------ACGC-GUGC- -5'
25510 5' -53.2 NC_005337.1 + 124767 0.66 0.954594
Target:  5'- cGGCCGcauGGugacggCCAUCGagcucUGCGCGCa -3'
miRNA:   3'- cCCGGUu--CCuua---GGUAGU-----ACGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 62030 0.66 0.95046
Target:  5'- uGGGCCAuGGcGUCUA-CGaagGCGCGCc -3'
miRNA:   3'- -CCCGGUuCCuUAGGUaGUa--CGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 52601 0.66 0.95046
Target:  5'- cGGCCAAGcaGAG-CCAgcaCAUGCaGCACa -3'
miRNA:   3'- cCCGGUUC--CUUaGGUa--GUACG-CGUGc -5'
25510 5' -53.2 NC_005337.1 + 13777 0.66 0.95046
Target:  5'- cGGCgAGGGGcgCCAggucguagcUCGUGUccGCGCGa -3'
miRNA:   3'- cCCGgUUCCUuaGGU---------AGUACG--CGUGC- -5'
25510 5' -53.2 NC_005337.1 + 55086 0.66 0.950033
Target:  5'- -cGCCGAGGAgcaggugAUCCA----GCGCGCGa -3'
miRNA:   3'- ccCGGUUCCU-------UAGGUaguaCGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 6144 0.67 0.947863
Target:  5'- cGGCCAGGGAcaugcgcaggCgCAUCAUGCagaccuugccgaagaGCGCGu -3'
miRNA:   3'- cCCGGUUCCUua--------G-GUAGUACG---------------CGUGC- -5'
25510 5' -53.2 NC_005337.1 + 75113 0.67 0.946083
Target:  5'- cGGCCuggGGGAGgaaCGUCGUGgggcuguacCGCACGg -3'
miRNA:   3'- cCCGGu--UCCUUag-GUAGUAC---------GCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 77396 0.67 0.946083
Target:  5'- uGGcGCC-AGGAucuucgucgCCAUgcgcuggcggugCAUGCGCACGa -3'
miRNA:   3'- -CC-CGGuUCCUua-------GGUA------------GUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 50911 0.67 0.946083
Target:  5'- gGGGCUgggaGAGGAA-CCGgugacCAUGCGCGa- -3'
miRNA:   3'- -CCCGG----UUCCUUaGGUa----GUACGCGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.