miRNA display CGI


Results 1 - 20 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 5' -53.2 NC_005337.1 + 98037 0.68 0.895432
Target:  5'- cGGGCUggGGuucGUCCGgga-GCGCGCc -3'
miRNA:   3'- -CCCGGuuCCu--UAGGUaguaCGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 23081 0.69 0.871113
Target:  5'- cGGCCGugcccggCAUCGUGCGCGCGg -3'
miRNA:   3'- cCCGGUuccuuagGUAGUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 40004 0.69 0.874114
Target:  5'- aGGCCAcGGAggCCAUC---CGCGCGg -3'
miRNA:   3'- cCCGGUuCCUuaGGUAGuacGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 115497 0.69 0.874114
Target:  5'- gGGGCCGuggacgucAGGugcgcccucgAGUCCAUCGUGUacgGCAUGu -3'
miRNA:   3'- -CCCGGU--------UCC----------UUAGGUAGUACG---CGUGC- -5'
25510 5' -53.2 NC_005337.1 + 85885 0.69 0.881456
Target:  5'- cGGGCaCAcGGAGcccUCCAgCAUGgGCACc -3'
miRNA:   3'- -CCCG-GUuCCUU---AGGUaGUACgCGUGc -5'
25510 5' -53.2 NC_005337.1 + 20983 0.68 0.888563
Target:  5'- cGGGUCu-GGA--UCAUCAUGgGCAUGg -3'
miRNA:   3'- -CCCGGuuCCUuaGGUAGUACgCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 42094 0.68 0.895432
Target:  5'- cGGUCAcgcgcucguuccGGGAGUCCAUCGagacgaggacgGCGCugGc -3'
miRNA:   3'- cCCGGU------------UCCUUAGGUAGUa----------CGCGugC- -5'
25510 5' -53.2 NC_005337.1 + 67318 0.68 0.895432
Target:  5'- uGGCCGAGGA--CCAggUCAUGgUGUACa -3'
miRNA:   3'- cCCGGUUCCUuaGGU--AGUAC-GCGUGc -5'
25510 5' -53.2 NC_005337.1 + 76095 0.68 0.895432
Target:  5'- cGGUCAu---GUCCAcguacaUCAUGCGCACGc -3'
miRNA:   3'- cCCGGUuccuUAGGU------AGUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 91092 0.69 0.857961
Target:  5'- uGGCCGGGGcgaucagcggcgaGGUCCggUcgGCGCGCa -3'
miRNA:   3'- cCCGGUUCC-------------UUAGGuaGuaCGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 23031 0.7 0.842525
Target:  5'- -cGUCGAGGAcguGUCCucguUCGUGaCGCACGc -3'
miRNA:   3'- ccCGGUUCCU---UAGGu---AGUAC-GCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 87803 0.7 0.834106
Target:  5'- cGGGCCAcccacaccaccAGGAGUCgCAcgCGUccGCGUACGc -3'
miRNA:   3'- -CCCGGU-----------UCCUUAG-GUa-GUA--CGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 69212 0.74 0.6058
Target:  5'- gGGGCgCAcGGAcuUCCAgaaCGUGCGCGCGc -3'
miRNA:   3'- -CCCG-GUuCCUu-AGGUa--GUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 91526 0.73 0.658329
Target:  5'- cGGGCgcgaGAGGcGUCgGUCAgcaGCGCGCGg -3'
miRNA:   3'- -CCCGg---UUCCuUAGgUAGUa--CGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 94811 0.73 0.668804
Target:  5'- cGGCac-GGAGgcgucguacUCCAUCGUGCGCACc -3'
miRNA:   3'- cCCGguuCCUU---------AGGUAGUACGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 70718 0.72 0.730658
Target:  5'- -cGCCAAGGAGUg---CGUGUGCACGg -3'
miRNA:   3'- ccCGGUUCCUUAgguaGUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 126410 0.72 0.74071
Target:  5'- cGGCCAAGG---CCGcCcgGCGCGCGa -3'
miRNA:   3'- cCCGGUUCCuuaGGUaGuaCGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 32062 0.71 0.770226
Target:  5'- cGGGCguAcgugucGGggUCCGUgAUGCGCAgCGu -3'
miRNA:   3'- -CCCGguU------CCuuAGGUAgUACGCGU-GC- -5'
25510 5' -53.2 NC_005337.1 + 18521 0.71 0.788331
Target:  5'- cGGGCagAAGGAAgaggCCGUaccgcgcCAUGCGUGCGa -3'
miRNA:   3'- -CCCGg-UUCCUUa---GGUA-------GUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 1291 0.7 0.834106
Target:  5'- cGGGUCGGcGGGcagguuGUCCAUCcgGCgGCGCa -3'
miRNA:   3'- -CCCGGUU-CCU------UAGGUAGuaCG-CGUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.