miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 5' -53.2 NC_005337.1 + 127444 1.11 0.003429
Target:  5'- cGGGCCAAGGAAUCCAUCAUGCGCACGc -3'
miRNA:   3'- -CCCGGUUCCUUAGGUAGUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 99041 0.77 0.435963
Target:  5'- aGGGCCAucGAAUCCGUCAcGCuCACGc -3'
miRNA:   3'- -CCCGGUucCUUAGGUAGUaCGcGUGC- -5'
25510 5' -53.2 NC_005337.1 + 98991 0.77 0.458437
Target:  5'- gGGGCCGAGGuggagccgccccCCGagGUGCGCGCGg -3'
miRNA:   3'- -CCCGGUUCCuua---------GGUagUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 23542 0.76 0.483463
Target:  5'- cGGGCCAuGG---CCAUCAUGCGguCGg -3'
miRNA:   3'- -CCCGGUuCCuuaGGUAGUACGCguGC- -5'
25510 5' -53.2 NC_005337.1 + 69212 0.74 0.6058
Target:  5'- gGGGCgCAcGGAcuUCCAgaaCGUGCGCGCGc -3'
miRNA:   3'- -CCCG-GUuCCUu-AGGUa--GUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 130520 0.74 0.626808
Target:  5'- aGGUCAuGGAGUUCcUgGUGCGCGCGg -3'
miRNA:   3'- cCCGGUuCCUUAGGuAgUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 124299 0.74 0.637322
Target:  5'- uGGCCGAGGAcgcggccUCCGUCGcgGCGCAgGc -3'
miRNA:   3'- cCCGGUUCCUu------AGGUAGUa-CGCGUgC- -5'
25510 5' -53.2 NC_005337.1 + 103102 0.74 0.637322
Target:  5'- cGGCCGAcaucgaccucccGGAGUgcggCAUCGUGCGCGCGc -3'
miRNA:   3'- cCCGGUU------------CCUUAg---GUAGUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 91526 0.73 0.658329
Target:  5'- cGGGCgcgaGAGGcGUCgGUCAgcaGCGCGCGg -3'
miRNA:   3'- -CCCGg---UUCCuUAGgUAGUa--CGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 94811 0.73 0.668804
Target:  5'- cGGCac-GGAGgcgucguacUCCAUCGUGCGCACc -3'
miRNA:   3'- cCCGguuCCUU---------AGGUAGUACGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 102528 0.72 0.700003
Target:  5'- -cGCCAcGGAGUCCAUCuuccUGCGCGa- -3'
miRNA:   3'- ccCGGUuCCUUAGGUAGu---ACGCGUgc -5'
25510 5' -53.2 NC_005337.1 + 33975 0.72 0.710294
Target:  5'- cGGCCAGGG---CCAggaagGUGCGCACGg -3'
miRNA:   3'- cCCGGUUCCuuaGGUag---UACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 11406 0.72 0.730658
Target:  5'- aGGGCCccGGGuUCCG-CAgGCGCGCGg -3'
miRNA:   3'- -CCCGGuuCCUuAGGUaGUaCGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 70718 0.72 0.730658
Target:  5'- -cGCCAAGGAGUg---CGUGUGCACGg -3'
miRNA:   3'- ccCGGUUCCUUAgguaGUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 130744 0.72 0.730658
Target:  5'- uGGCCGcuGggUCCGaCGUGUGCACc -3'
miRNA:   3'- cCCGGUucCuuAGGUaGUACGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 126410 0.72 0.74071
Target:  5'- cGGCCAAGG---CCGcCcgGCGCGCGa -3'
miRNA:   3'- cCCGGUUCCuuaGGUaGuaCGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 32062 0.71 0.770226
Target:  5'- cGGGCguAcgugucGGggUCCGUgAUGCGCAgCGu -3'
miRNA:   3'- -CCCGguU------CCuuAGGUAgUACGCGU-GC- -5'
25510 5' -53.2 NC_005337.1 + 18521 0.71 0.788331
Target:  5'- cGGGCagAAGGAAgaggCCGUaccgcgcCAUGCGUGCGa -3'
miRNA:   3'- -CCCGg-UUCCUUa---GGUA-------GUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 41615 0.7 0.807717
Target:  5'- uGGCgAAGGAggCCGUgGUGCGaCGCc -3'
miRNA:   3'- cCCGgUUCCUuaGGUAgUACGC-GUGc -5'
25510 5' -53.2 NC_005337.1 + 87803 0.7 0.834106
Target:  5'- cGGGCCAcccacaccaccAGGAGUCgCAcgCGUccGCGUACGc -3'
miRNA:   3'- -CCCGGU-----------UCCUUAG-GUa-GUA--CGCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.