miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 5' -53.2 NC_005337.1 + 87803 0.7 0.834106
Target:  5'- cGGGCCAcccacaccaccAGGAGUCgCAcgCGUccGCGUACGc -3'
miRNA:   3'- -CCCGGU-----------UCCUUAG-GUa-GUA--CGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 31677 0.7 0.837497
Target:  5'- cGGUCcGGGAAgaacacgcaguagaCCAUCuUGCGCACGa -3'
miRNA:   3'- cCCGGuUCCUUa-------------GGUAGuACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 23031 0.7 0.842525
Target:  5'- -cGUCGAGGAcguGUCCucguUCGUGaCGCACGc -3'
miRNA:   3'- ccCGGUUCCU---UAGGu---AGUAC-GCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 107078 0.69 0.850743
Target:  5'- -cGCCAGGGggUgCcgC-UGUGCGCGg -3'
miRNA:   3'- ccCGGUUCCuuAgGuaGuACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 10970 0.69 0.850743
Target:  5'- uGGCCGGcGGAUCCGcgcagcgCGUGCgGCACGg -3'
miRNA:   3'- cCCGGUUcCUUAGGUa------GUACG-CGUGC- -5'
25510 5' -53.2 NC_005337.1 + 91092 0.69 0.857961
Target:  5'- uGGCCGGGGcgaucagcggcgaGGUCCggUcgGCGCGCa -3'
miRNA:   3'- cCCGGUUCC-------------UUAGGuaGuaCGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 101993 0.69 0.866544
Target:  5'- cGGCCGAGuucacgcccGAGUaCAUCGUGCaGCGCGc -3'
miRNA:   3'- cCCGGUUC---------CUUAgGUAGUACG-CGUGC- -5'
25510 5' -53.2 NC_005337.1 + 23081 0.69 0.871113
Target:  5'- cGGCCGugcccggCAUCGUGCGCGCGg -3'
miRNA:   3'- cCCGGUuccuuagGUAGUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 115497 0.69 0.874114
Target:  5'- gGGGCCGuggacgucAGGugcgcccucgAGUCCAUCGUGUacgGCAUGu -3'
miRNA:   3'- -CCCGGU--------UCC----------UUAGGUAGUACG---CGUGC- -5'
25510 5' -53.2 NC_005337.1 + 33341 0.69 0.874114
Target:  5'- aGGGCUugcuGGggUCg---GUGCGCACGg -3'
miRNA:   3'- -CCCGGuu--CCuuAGguagUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 40004 0.69 0.874114
Target:  5'- aGGCCAcGGAggCCAUC---CGCGCGg -3'
miRNA:   3'- cCCGGUuCCUuaGGUAGuacGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 85885 0.69 0.881456
Target:  5'- cGGGCaCAcGGAGcccUCCAgCAUGgGCACc -3'
miRNA:   3'- -CCCG-GUuCCUU---AGGUaGUACgCGUGc -5'
25510 5' -53.2 NC_005337.1 + 20983 0.68 0.888563
Target:  5'- cGGGUCu-GGA--UCAUCAUGgGCAUGg -3'
miRNA:   3'- -CCCGGuuCCUuaGGUAGUACgCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 98037 0.68 0.895432
Target:  5'- cGGGCUggGGuucGUCCGgga-GCGCGCc -3'
miRNA:   3'- -CCCGGuuCCu--UAGGUaguaCGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 76095 0.68 0.895432
Target:  5'- cGGUCAu---GUCCAcguacaUCAUGCGCACGc -3'
miRNA:   3'- cCCGGUuccuUAGGU------AGUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 67318 0.68 0.895432
Target:  5'- uGGCCGAGGA--CCAggUCAUGgUGUACa -3'
miRNA:   3'- cCCGGUUCCUuaGGU--AGUAC-GCGUGc -5'
25510 5' -53.2 NC_005337.1 + 42094 0.68 0.895432
Target:  5'- cGGUCAcgcgcucguuccGGGAGUCCAUCGagacgaggacgGCGCugGc -3'
miRNA:   3'- cCCGGU------------UCCUUAGGUAGUa----------CGCGugC- -5'
25510 5' -53.2 NC_005337.1 + 75622 0.68 0.902059
Target:  5'- -cGCCGAGGAcgcgcgggCCGUCGUGauggGCGCGu -3'
miRNA:   3'- ccCGGUUCCUua------GGUAGUACg---CGUGC- -5'
25510 5' -53.2 NC_005337.1 + 101725 0.68 0.902059
Target:  5'- cGGCuCAAGGAcAUCCucacCGUGCGC-CGc -3'
miRNA:   3'- cCCG-GUUCCU-UAGGua--GUACGCGuGC- -5'
25510 5' -53.2 NC_005337.1 + 54515 0.68 0.902059
Target:  5'- gGGGCCuccgacGggUCCAU-AUGCcGCACGu -3'
miRNA:   3'- -CCCGGuuc---CuuAGGUAgUACG-CGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.