miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 5' -53.2 NC_005337.1 + 133837 0.67 0.936584
Target:  5'- -uGUCAAGGcGUCCGUgCGUcCGCACGa -3'
miRNA:   3'- ccCGGUUCCuUAGGUA-GUAcGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 110057 0.67 0.936584
Target:  5'- cGGCCGGGGGcagcUCCAccUCGacGCGCGCc -3'
miRNA:   3'- cCCGGUUCCUu---AGGU--AGUa-CGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 118785 0.67 0.936584
Target:  5'- -cGCCGgcGGcGGcgCCGUCGUGcCGCGCGc -3'
miRNA:   3'- ccCGGU--UC-CUuaGGUAGUAC-GCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 133837 0.67 0.936584
Target:  5'- -uGUCAAGGcGUCCGUgCGUcCGCACGa -3'
miRNA:   3'- ccCGGUUCCuUAGGUA-GUAcGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 6144 0.67 0.947863
Target:  5'- cGGCCAGGGAcaugcgcaggCgCAUCAUGCagaccuugccgaagaGCGCGu -3'
miRNA:   3'- cCCGGUUCCUua--------G-GUAGUACG---------------CGUGC- -5'
25510 5' -53.2 NC_005337.1 + 75996 0.67 0.946083
Target:  5'- aGGCgAAGGuggCCGcCGUGCGC-CGg -3'
miRNA:   3'- cCCGgUUCCuuaGGUaGUACGCGuGC- -5'
25510 5' -53.2 NC_005337.1 + 50911 0.67 0.946083
Target:  5'- gGGGCUgggaGAGGAA-CCGgugacCAUGCGCGa- -3'
miRNA:   3'- -CCCGG----UUCCUUaGGUa----GUACGCGUgc -5'
25510 5' -53.2 NC_005337.1 + 75113 0.67 0.946083
Target:  5'- cGGCCuggGGGAGgaaCGUCGUGgggcuguacCGCACGg -3'
miRNA:   3'- cCCGGu--UCCUUag-GUAGUAC---------GCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 77396 0.67 0.946083
Target:  5'- uGGcGCC-AGGAucuucgucgCCAUgcgcuggcggugCAUGCGCACGa -3'
miRNA:   3'- -CC-CGGuUCCUua-------GGUA------------GUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 95271 0.67 0.941458
Target:  5'- aGGGUCAGccgguggguGGAcaugacgaGUCCGUag-GCGCGCGg -3'
miRNA:   3'- -CCCGGUU---------CCU--------UAGGUAguaCGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 46304 0.67 0.92442
Target:  5'- uGGGCCAccugcuggaccuccAGGAGgacaUCAUCGUGUacucGCACa -3'
miRNA:   3'- -CCCGGU--------------UCCUUa---GGUAGUACG----CGUGc -5'
25510 5' -53.2 NC_005337.1 + 407 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 224 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 285 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 346 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 163 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 163 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 224 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 285 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 346 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.