miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 5' -53.2 NC_005337.1 + 10970 0.69 0.850743
Target:  5'- uGGCCGGcGGAUCCGcgcagcgCGUGCgGCACGg -3'
miRNA:   3'- cCCGGUUcCUUAGGUa------GUACG-CGUGC- -5'
25510 5' -53.2 NC_005337.1 + 11389 0.66 0.965574
Target:  5'- -cGCCgAAGucGUUCAgCGUGCGCGCGg -3'
miRNA:   3'- ccCGG-UUCcuUAGGUaGUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 11406 0.72 0.730658
Target:  5'- aGGGCCccGGGuUCCG-CAgGCGCGCGg -3'
miRNA:   3'- -CCCGGuuCCUuAGGUaGUaCGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 13777 0.66 0.95046
Target:  5'- cGGCgAGGGGcgCCAggucguagcUCGUGUccGCGCGa -3'
miRNA:   3'- cCCGgUUCCUuaGGU---------AGUACG--CGUGC- -5'
25510 5' -53.2 NC_005337.1 + 18521 0.71 0.788331
Target:  5'- cGGGCagAAGGAAgaggCCGUaccgcgcCAUGCGUGCGa -3'
miRNA:   3'- -CCCGg-UUCCUUa---GGUA-------GUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 20983 0.68 0.888563
Target:  5'- cGGGUCu-GGA--UCAUCAUGgGCAUGg -3'
miRNA:   3'- -CCCGGuuCCUuaGGUAGUACgCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 23031 0.7 0.842525
Target:  5'- -cGUCGAGGAcguGUCCucguUCGUGaCGCACGc -3'
miRNA:   3'- ccCGGUUCCU---UAGGu---AGUAC-GCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 23081 0.69 0.871113
Target:  5'- cGGCCGugcccggCAUCGUGCGCGCGg -3'
miRNA:   3'- cCCGGUuccuuagGUAGUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 23542 0.76 0.483463
Target:  5'- cGGGCCAuGG---CCAUCAUGCGguCGg -3'
miRNA:   3'- -CCCGGUuCCuuaGGUAGUACGCguGC- -5'
25510 5' -53.2 NC_005337.1 + 31677 0.7 0.837497
Target:  5'- cGGUCcGGGAAgaacacgcaguagaCCAUCuUGCGCACGa -3'
miRNA:   3'- cCCGGuUCCUUa-------------GGUAGuACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 32062 0.71 0.770226
Target:  5'- cGGGCguAcgugucGGggUCCGUgAUGCGCAgCGu -3'
miRNA:   3'- -CCCGguU------CCuuAGGUAgUACGCGU-GC- -5'
25510 5' -53.2 NC_005337.1 + 33341 0.69 0.874114
Target:  5'- aGGGCUugcuGGggUCg---GUGCGCACGg -3'
miRNA:   3'- -CCCGGuu--CCuuAGguagUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 33837 0.68 0.920453
Target:  5'- aGGGCCGuguuuaugaAGucGUCCA-CGUgGCGCGCGu -3'
miRNA:   3'- -CCCGGU---------UCcuUAGGUaGUA-CGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 33975 0.72 0.710294
Target:  5'- cGGCCAGGG---CCAggaagGUGCGCACGg -3'
miRNA:   3'- cCCGGUUCCuuaGGUag---UACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 34041 0.66 0.958487
Target:  5'- cGGGC--GGGAccgCgAUCAcGCGCACGc -3'
miRNA:   3'- -CCCGguUCCUua-GgUAGUaCGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 37428 0.67 0.936584
Target:  5'- cGGaGCCGGGGGAacgCCAcgccgCGgcUGCGCACc -3'
miRNA:   3'- -CC-CGGUUCCUUa--GGUa----GU--ACGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 38653 0.66 0.965574
Target:  5'- cGGGCCcgcgcccacGGAcgCCGcCAUgGCGCGCu -3'
miRNA:   3'- -CCCGGuu-------CCUuaGGUaGUA-CGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 40004 0.69 0.874114
Target:  5'- aGGCCAcGGAggCCAUC---CGCGCGg -3'
miRNA:   3'- cCCGGUuCCUuaGGUAGuacGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 41615 0.7 0.807717
Target:  5'- uGGCgAAGGAggCCGUgGUGCGaCGCc -3'
miRNA:   3'- cCCGgUUCCUuaGGUAgUACGC-GUGc -5'
25510 5' -53.2 NC_005337.1 + 42094 0.68 0.895432
Target:  5'- cGGUCAcgcgcucguuccGGGAGUCCAUCGagacgaggacgGCGCugGc -3'
miRNA:   3'- cCCGGU------------UCCUUAGGUAGUa----------CGCGugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.