miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 5' -53.2 NC_005337.1 + 127444 1.11 0.003429
Target:  5'- cGGGCCAAGGAAUCCAUCAUGCGCACGc -3'
miRNA:   3'- -CCCGGUUCCUUAGGUAGUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 49 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 163 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 107262 0.66 0.965574
Target:  5'- uGGCCGGGGAgcacAUCCGcuUCcgGCuGC-CGg -3'
miRNA:   3'- cCCGGUUCCU----UAGGU--AGuaCG-CGuGC- -5'
25510 5' -53.2 NC_005337.1 + 103102 0.74 0.637322
Target:  5'- cGGCCGAcaucgaccucccGGAGUgcggCAUCGUGCGCGCGc -3'
miRNA:   3'- cCCGGUU------------CCUUAg---GUAGUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 124299 0.74 0.637322
Target:  5'- uGGCCGAGGAcgcggccUCCGUCGcgGCGCAgGc -3'
miRNA:   3'- cCCGGUUCCUu------AGGUAGUa-CGCGUgC- -5'
25510 5' -53.2 NC_005337.1 + 33975 0.72 0.710294
Target:  5'- cGGCCAGGG---CCAggaagGUGCGCACGg -3'
miRNA:   3'- cCCGGUUCCuuaGGUag---UACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 11406 0.72 0.730658
Target:  5'- aGGGCCccGGGuUCCG-CAgGCGCGCGg -3'
miRNA:   3'- -CCCGGuuCCUuAGGUaGUaCGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 31677 0.7 0.837497
Target:  5'- cGGUCcGGGAAgaacacgcaguagaCCAUCuUGCGCACGa -3'
miRNA:   3'- cCCGGuUCCUUa-------------GGUAGuACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 75622 0.68 0.902059
Target:  5'- -cGCCGAGGAcgcgcgggCCGUCGUGauggGCGCGu -3'
miRNA:   3'- ccCGGUUCCUua------GGUAGUACg---CGUGC- -5'
25510 5' -53.2 NC_005337.1 + 10970 0.69 0.850743
Target:  5'- uGGCCGGcGGAUCCGcgcagcgCGUGCgGCACGg -3'
miRNA:   3'- cCCGGUUcCUUAGGUa------GUACG-CGUGC- -5'
25510 5' -53.2 NC_005337.1 + 41615 0.7 0.807717
Target:  5'- uGGCgAAGGAggCCGUgGUGCGaCGCc -3'
miRNA:   3'- cCCGgUUCCUuaGGUAgUACGC-GUGc -5'
25510 5' -53.2 NC_005337.1 + 99041 0.77 0.435963
Target:  5'- aGGGCCAucGAAUCCGUCAcGCuCACGc -3'
miRNA:   3'- -CCCGGUucCUUAGGUAGUaCGcGUGC- -5'
25510 5' -53.2 NC_005337.1 + 101993 0.69 0.866544
Target:  5'- cGGCCGAGuucacgcccGAGUaCAUCGUGCaGCGCGc -3'
miRNA:   3'- cCCGGUUC---------CUUAgGUAGUACG-CGUGC- -5'
25510 5' -53.2 NC_005337.1 + 23542 0.76 0.483463
Target:  5'- cGGGCCAuGG---CCAUCAUGCGguCGg -3'
miRNA:   3'- -CCCGGUuCCuuaGGUAGUACGCguGC- -5'
25510 5' -53.2 NC_005337.1 + 130744 0.72 0.730658
Target:  5'- uGGCCGcuGggUCCGaCGUGUGCACc -3'
miRNA:   3'- cCCGGUucCuuAGGUaGUACGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 33341 0.69 0.874114
Target:  5'- aGGGCUugcuGGggUCg---GUGCGCACGg -3'
miRNA:   3'- -CCCGGuu--CCuuAGguagUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 102 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 130520 0.74 0.626808
Target:  5'- aGGUCAuGGAGUUCcUgGUGCGCGCGg -3'
miRNA:   3'- cCCGGUuCCUUAGGuAgUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 102528 0.72 0.700003
Target:  5'- -cGCCAcGGAGUCCAUCuuccUGCGCGa- -3'
miRNA:   3'- ccCGGUuCCUUAGGUAGu---ACGCGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.