miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 5' -53.2 NC_005337.1 + 133837 0.67 0.936584
Target:  5'- -uGUCAAGGcGUCCGUgCGUcCGCACGa -3'
miRNA:   3'- ccCGGUUCCuUAGGUA-GUAcGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 133837 0.67 0.936584
Target:  5'- -uGUCAAGGcGUCCGUgCGUcCGCACGa -3'
miRNA:   3'- ccCGGUUCCuUAGGUA-GUAcGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 130744 0.72 0.730658
Target:  5'- uGGCCGcuGggUCCGaCGUGUGCACc -3'
miRNA:   3'- cCCGGUucCuuAGGUaGUACGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 130520 0.74 0.626808
Target:  5'- aGGUCAuGGAGUUCcUgGUGCGCGCGg -3'
miRNA:   3'- cCCGGUuCCUUAGGuAgUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 128773 0.67 0.936083
Target:  5'- aGGCgCAGGcggauucGggUCCAcgggCGUGCGCACc -3'
miRNA:   3'- cCCG-GUUC-------CuuAGGUa---GUACGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 127444 1.11 0.003429
Target:  5'- cGGGCCAAGGAAUCCAUCAUGCGCACGc -3'
miRNA:   3'- -CCCGGUUCCUUAGGUAGUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 126421 0.68 0.920453
Target:  5'- cGGCCGAccuGGAcUCCAcgcUCccGCGCACc -3'
miRNA:   3'- cCCGGUU---CCUuAGGU---AGuaCGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 126410 0.72 0.74071
Target:  5'- cGGCCAAGG---CCGcCcgGCGCGCGa -3'
miRNA:   3'- cCCGGUUCCuuaGGUaGuaCGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 124767 0.66 0.954594
Target:  5'- cGGCCGcauGGugacggCCAUCGagcucUGCGCGCa -3'
miRNA:   3'- cCCGGUu--CCuua---GGUAGU-----ACGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 124299 0.74 0.637322
Target:  5'- uGGCCGAGGAcgcggccUCCGUCGcgGCGCAgGc -3'
miRNA:   3'- cCCGGUUCCUu------AGGUAGUa-CGCGUgC- -5'
25510 5' -53.2 NC_005337.1 + 118785 0.67 0.936584
Target:  5'- -cGCCGgcGGcGGcgCCGUCGUGcCGCGCGc -3'
miRNA:   3'- ccCGGU--UC-CUuaGGUAGUAC-GCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 117821 0.68 0.920453
Target:  5'- uGGcGCCcGGGGAcCCGggcgggGUGCGCACGc -3'
miRNA:   3'- -CC-CGGuUCCUUaGGUag----UACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 115497 0.69 0.874114
Target:  5'- gGGGCCGuggacgucAGGugcgcccucgAGUCCAUCGUGUacgGCAUGu -3'
miRNA:   3'- -CCCGGU--------UCC----------UUAGGUAGUACG---CGUGC- -5'
25510 5' -53.2 NC_005337.1 + 110057 0.67 0.936584
Target:  5'- cGGCCGGGGGcagcUCCAccUCGacGCGCGCc -3'
miRNA:   3'- cCCGGUUCCUu---AGGU--AGUa-CGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 107262 0.66 0.965574
Target:  5'- uGGCCGGGGAgcacAUCCGcuUCcgGCuGC-CGg -3'
miRNA:   3'- cCCGGUUCCU----UAGGU--AGuaCG-CGuGC- -5'
25510 5' -53.2 NC_005337.1 + 107078 0.69 0.850743
Target:  5'- -cGCCAGGGggUgCcgC-UGUGCGCGg -3'
miRNA:   3'- ccCGGUUCCuuAgGuaGuACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 103102 0.74 0.637322
Target:  5'- cGGCCGAcaucgaccucccGGAGUgcggCAUCGUGCGCGCGc -3'
miRNA:   3'- cCCGGUU------------CCUUAg---GUAGUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 102851 0.66 0.958109
Target:  5'- cGGGCCGcgcgccAGGAagugcauGUUCGUCAuggacaugaUGCGcCGCGa -3'
miRNA:   3'- -CCCGGU------UCCU-------UAGGUAGU---------ACGC-GUGC- -5'
25510 5' -53.2 NC_005337.1 + 102528 0.72 0.700003
Target:  5'- -cGCCAcGGAGUCCAUCuuccUGCGCGa- -3'
miRNA:   3'- ccCGGUuCCUUAGGUAGu---ACGCGUgc -5'
25510 5' -53.2 NC_005337.1 + 101993 0.69 0.866544
Target:  5'- cGGCCGAGuucacgcccGAGUaCAUCGUGCaGCGCGc -3'
miRNA:   3'- cCCGGUUC---------CUUAgGUAGUACG-CGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.