miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25512 3' -59 NC_005337.1 + 3073 0.66 0.79359
Target:  5'- aGCGCGGACuc---CGCGCaccucgGCGACGg -3'
miRNA:   3'- cCGCGCCUGcacuuGCGCG------CGCUGCa -5'
25512 3' -59 NC_005337.1 + 63891 0.66 0.788274
Target:  5'- gGGCGgaagcaguacuucuaCGGACGcGAccACGUGCGgCGGCGc -3'
miRNA:   3'- -CCGC---------------GCCUGCaCU--UGCGCGC-GCUGCa -5'
25512 3' -59 NC_005337.1 + 101464 0.66 0.784704
Target:  5'- gGGCGCGaGuGCGUGGACcagGCGCaGGCGc -3'
miRNA:   3'- -CCGCGC-C-UGCACUUGcg-CGCG-CUGCa -5'
25512 3' -59 NC_005337.1 + 117244 0.66 0.766551
Target:  5'- cGCGCGGaACGcGAcgcagUGCGCGCugGACGUc -3'
miRNA:   3'- cCGCGCC-UGCaCUu----GCGCGCG--CUGCA- -5'
25512 3' -59 NC_005337.1 + 48934 0.66 0.784704
Target:  5'- cGGCaacuGCGG-CGUGAAgGCG-GUGAUGg -3'
miRNA:   3'- -CCG----CGCCuGCACUUgCGCgCGCUGCa -5'
25512 3' -59 NC_005337.1 + 113103 0.66 0.775688
Target:  5'- -cUGCGG-CGcUGAGCGCGC-CGAUGa -3'
miRNA:   3'- ccGCGCCuGC-ACUUGCGCGcGCUGCa -5'
25512 3' -59 NC_005337.1 + 10084 0.66 0.766551
Target:  5'- gGGUGcCGGGCGcGAA-GCGgGCGAgGUc -3'
miRNA:   3'- -CCGC-GCCUGCaCUUgCGCgCGCUgCA- -5'
25512 3' -59 NC_005337.1 + 49338 0.66 0.779309
Target:  5'- -aCGCGGAgGgcaacucgaugcuucUGcGGCGCGUGCGGCGg -3'
miRNA:   3'- ccGCGCCUgC---------------AC-UUGCGCGCGCUGCa -5'
25512 3' -59 NC_005337.1 + 99278 0.66 0.766551
Target:  5'- cGGCaCGGcCGUcugccuGGCGCgGCGCGGCGUu -3'
miRNA:   3'- -CCGcGCCuGCAc-----UUGCG-CGCGCUGCA- -5'
25512 3' -59 NC_005337.1 + 68125 0.66 0.784704
Target:  5'- gGGuCGCGGGgccgGUGGcCGCGCGCGccccuaGCGg -3'
miRNA:   3'- -CC-GCGCCUg---CACUuGCGCGCGC------UGCa -5'
25512 3' -59 NC_005337.1 + 31632 0.66 0.79359
Target:  5'- uGGCGCGGGCGaagauccgGAGCuuGaGCGACa- -3'
miRNA:   3'- -CCGCGCCUGCa-------CUUGcgCgCGCUGca -5'
25512 3' -59 NC_005337.1 + 1137 0.66 0.790052
Target:  5'- cGCGCGcGACcagcuccgcgggGAGCGCGC-CGGCGg -3'
miRNA:   3'- cCGCGC-CUGca----------CUUGCGCGcGCUGCa -5'
25512 3' -59 NC_005337.1 + 132567 0.66 0.784704
Target:  5'- cGGCacgGUGGcCGUGucgcuguugcGACGCGCGCuGCGg -3'
miRNA:   3'- -CCG---CGCCuGCAC----------UUGCGCGCGcUGCa -5'
25512 3' -59 NC_005337.1 + 84565 0.66 0.784704
Target:  5'- cGCGCGGcagcGCGUGAcCGCGaGgGugGa -3'
miRNA:   3'- cCGCGCC----UGCACUuGCGCgCgCugCa -5'
25512 3' -59 NC_005337.1 + 106642 0.66 0.81094
Target:  5'- uGGCGCGcuccgccaaGAUcccgGAGCGCGaGCGGCGg -3'
miRNA:   3'- -CCGCGC---------CUGca--CUUGCGCgCGCUGCa -5'
25512 3' -59 NC_005337.1 + 128789 0.66 0.766551
Target:  5'- gGGUGCGcGCGaucaUGGGCGgGUGCGGCu- -3'
miRNA:   3'- -CCGCGCcUGC----ACUUGCgCGCGCUGca -5'
25512 3' -59 NC_005337.1 + 41676 0.66 0.766551
Target:  5'- aGGCGCGGACGUccACGuCGUcgaaGC-ACGUc -3'
miRNA:   3'- -CCGCGCCUGCAcuUGC-GCG----CGcUGCA- -5'
25512 3' -59 NC_005337.1 + 78001 0.66 0.775688
Target:  5'- cGGCGa--ACGUGAuCGCGUgguaguccGCGACGUa -3'
miRNA:   3'- -CCGCgccUGCACUuGCGCG--------CGCUGCA- -5'
25512 3' -59 NC_005337.1 + 80205 0.66 0.790938
Target:  5'- cGCGCGucuCGUugauGAGCGCGCGCacgcggucggggucGGCGUa -3'
miRNA:   3'- cCGCGCcu-GCA----CUUGCGCGCG--------------CUGCA- -5'
25512 3' -59 NC_005337.1 + 110336 0.66 0.775688
Target:  5'- cGGC-CGGGCGgcguCGCGCGCGcCu- -3'
miRNA:   3'- -CCGcGCCUGCacuuGCGCGCGCuGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.