miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25512 3' -59 NC_005337.1 + 100021 0.74 0.360327
Target:  5'- cGGCGCGGACcgugcUGGAggugcucgacgggacCGUGCGCGugGUc -3'
miRNA:   3'- -CCGCGCCUGc----ACUU---------------GCGCGCGCugCA- -5'
25512 3' -59 NC_005337.1 + 38343 0.76 0.267172
Target:  5'- uGGC-UGGACGUGGagcgcgagGCGCGCGCGGCc- -3'
miRNA:   3'- -CCGcGCCUGCACU--------UGCGCGCGCUGca -5'
25512 3' -59 NC_005337.1 + 39957 0.76 0.286196
Target:  5'- cGCGCGGGCGcucGACGCauucgaGCGCGACGg -3'
miRNA:   3'- cCGCGCCUGCac-UUGCG------CGCGCUGCa -5'
25512 3' -59 NC_005337.1 + 66098 0.75 0.299463
Target:  5'- aGGCGCugugcGGCGUcuGCGCGCGCGugGa -3'
miRNA:   3'- -CCGCGc----CUGCAcuUGCGCGCGCugCa -5'
25512 3' -59 NC_005337.1 + 68295 0.75 0.320246
Target:  5'- cGGCcgGCGG-CGUGGACGCGCGUgcccgaggagGGCGg -3'
miRNA:   3'- -CCG--CGCCuGCACUUGCGCGCG----------CUGCa -5'
25512 3' -59 NC_005337.1 + 74915 0.75 0.320246
Target:  5'- uGGCGCGGcugGCGgccuucGCGCGCGCGGCc- -3'
miRNA:   3'- -CCGCGCC---UGCacu---UGCGCGCGCUGca -5'
25512 3' -59 NC_005337.1 + 68406 0.75 0.320246
Target:  5'- cGCGCGuGCGUGGuaGCGCGCGCcgccGACGa -3'
miRNA:   3'- cCGCGCcUGCACU--UGCGCGCG----CUGCa -5'
25512 3' -59 NC_005337.1 + 43848 0.74 0.342091
Target:  5'- cGGCGCGGugGaGAuCGUGUacuGCGACGg -3'
miRNA:   3'- -CCGCGCCugCaCUuGCGCG---CGCUGCa -5'
25512 3' -59 NC_005337.1 + 128472 0.74 0.349608
Target:  5'- cGGCGCGGgagaccGCGUGcuCGCGgGCGuGCGUc -3'
miRNA:   3'- -CCGCGCC------UGCACuuGCGCgCGC-UGCA- -5'
25512 3' -59 NC_005337.1 + 128124 0.76 0.261062
Target:  5'- uGCGCGGcugccGCGUGAACGCGCGaaACGc -3'
miRNA:   3'- cCGCGCC-----UGCACUUGCGCGCgcUGCa -5'
25512 3' -59 NC_005337.1 + 126424 0.76 0.255066
Target:  5'- cGGCGCGcGACG-GcGCGCGUGCG-CGUg -3'
miRNA:   3'- -CCGCGC-CUGCaCuUGCGCGCGCuGCA- -5'
25512 3' -59 NC_005337.1 + 17797 0.77 0.249183
Target:  5'- aGGCGCGucugucGCGUGAaguacuccucgAUGCGCGCGGCGa -3'
miRNA:   3'- -CCGCGCc-----UGCACU-----------UGCGCGCGCUGCa -5'
25512 3' -59 NC_005337.1 + 125644 0.85 0.069505
Target:  5'- cGGCGCGGACGUGAACGCcaaagaCGCGuACGg -3'
miRNA:   3'- -CCGCGCCUGCACUUGCGc-----GCGC-UGCa -5'
25512 3' -59 NC_005337.1 + 121688 0.84 0.083388
Target:  5'- cGCGCGGgcgccaACGUGAACGCGCGCGGgGa -3'
miRNA:   3'- cCGCGCC------UGCACUUGCGCGCGCUgCa -5'
25512 3' -59 NC_005337.1 + 99443 0.82 0.110664
Target:  5'- cGGCGUGGGCcaccucGUGGACGCGCGCGuGCGc -3'
miRNA:   3'- -CCGCGCCUG------CACUUGCGCGCGC-UGCa -5'
25512 3' -59 NC_005337.1 + 122211 0.8 0.146123
Target:  5'- gGGCGCGGACGUGucgGCGCGCacGCcgGACGa -3'
miRNA:   3'- -CCGCGCCUGCACu--UGCGCG--CG--CUGCa -5'
25512 3' -59 NC_005337.1 + 47598 0.78 0.196368
Target:  5'- gGGCGUGGGCGacgccGCGCGCGCGGCc- -3'
miRNA:   3'- -CCGCGCCUGCacu--UGCGCGCGCUGca -5'
25512 3' -59 NC_005337.1 + 42847 0.77 0.221438
Target:  5'- cGCGUGGugGUGAcggACGCcuGCGUGACGa -3'
miRNA:   3'- cCGCGCCugCACU---UGCG--CGCGCUGCa -5'
25512 3' -59 NC_005337.1 + 7052 0.77 0.226768
Target:  5'- cGGgGCGGGCGgcgGGguuGCGCGCGUaGACGUg -3'
miRNA:   3'- -CCgCGCCUGCa--CU---UGCGCGCG-CUGCA- -5'
25512 3' -59 NC_005337.1 + 39653 0.77 0.232207
Target:  5'- cGGCGCGGccGCGUGGG-GCGCGUGGCc- -3'
miRNA:   3'- -CCGCGCC--UGCACUUgCGCGCGCUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.