miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25512 3' -59 NC_005337.1 + 17 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 17 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 78 0.67 0.728953
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGg -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 78 0.67 0.728953
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGg -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 131 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 131 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 192 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 192 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 253 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 253 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 314 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 314 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 375 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 375 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 694 0.68 0.690087
Target:  5'- cGCGCGGAgGcGAAgcuCGCGCGC-ACGc -3'
miRNA:   3'- cCGCGCCUgCaCUU---GCGCGCGcUGCa -5'
25512 3' -59 NC_005337.1 + 694 0.68 0.690087
Target:  5'- cGCGCGGAgGcGAAgcuCGCGCGC-ACGc -3'
miRNA:   3'- cCGCGCCUgCaCUU---GCGCGCGcUGCa -5'
25512 3' -59 NC_005337.1 + 725 0.7 0.580932
Target:  5'- cGGcCGCGGgguACGcGGGCGagaGCGCGGCGc -3'
miRNA:   3'- -CC-GCGCC---UGCaCUUGCg--CGCGCUGCa -5'
25512 3' -59 NC_005337.1 + 725 0.7 0.580932
Target:  5'- cGGcCGCGGgguACGcGGGCGagaGCGCGGCGc -3'
miRNA:   3'- -CC-GCGCC---UGCaCUUGCg--CGCGCUGCa -5'
25512 3' -59 NC_005337.1 + 815 0.66 0.81094
Target:  5'- -cCGCGGAgcCGUccGCGCGCGCGGg-- -3'
miRNA:   3'- ccGCGCCU--GCAcuUGCGCGCGCUgca -5'
25512 3' -59 NC_005337.1 + 815 0.66 0.81094
Target:  5'- -cCGCGGAgcCGUccGCGCGCGCGGg-- -3'
miRNA:   3'- ccGCGCCU--GCAcuUGCGCGCGCUgca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.