miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25512 3' -59 NC_005337.1 + 126942 1.09 0.001582
Target:  5'- gGGCGCGGACGUGAACGCGCGCGACGUg -3'
miRNA:   3'- -CCGCGCCUGCACUUGCGCGCGCUGCA- -5'
25512 3' -59 NC_005337.1 + 80248 0.74 0.357242
Target:  5'- uGCGUGauaucgaugggcGACGUGcGCGUGCGCGACGc -3'
miRNA:   3'- cCGCGC------------CUGCACuUGCGCGCGCUGCa -5'
25512 3' -59 NC_005337.1 + 69567 0.74 0.372857
Target:  5'- cGGCGCGGAgGUGGcagAgGCacacCGCGACGUc -3'
miRNA:   3'- -CCGCGCCUgCACU---UgCGc---GCGCUGCA- -5'
25512 3' -59 NC_005337.1 + 106642 0.66 0.81094
Target:  5'- uGGCGCGcuccgccaaGAUcccgGAGCGCGaGCGGCGg -3'
miRNA:   3'- -CCGCGC---------CUGca--CUUGCGCgCGCUGCa -5'
25512 3' -59 NC_005337.1 + 8265 0.81 0.135535
Target:  5'- cGCGCGGGgGuUGAACGCGgcCGCGACGUg -3'
miRNA:   3'- cCGCGCCUgC-ACUUGCGC--GCGCUGCA- -5'
25512 3' -59 NC_005337.1 + 105994 0.78 0.193532
Target:  5'- cGGCGUGGGguuCGUGAucacggacaccacgcACGUGCGCGugGUg -3'
miRNA:   3'- -CCGCGCCU---GCACU---------------UGCGCGCGCugCA- -5'
25512 3' -59 NC_005337.1 + 128603 0.78 0.211097
Target:  5'- gGGCGCGGGCGUGAuagACGCcgacuacCGCGGCa- -3'
miRNA:   3'- -CCGCGCCUGCACU---UGCGc------GCGCUGca -5'
25512 3' -59 NC_005337.1 + 132123 0.77 0.249183
Target:  5'- gGGUGCcGACGUGAACGCcCGgGGCGUc -3'
miRNA:   3'- -CCGCGcCUGCACUUGCGcGCgCUGCA- -5'
25512 3' -59 NC_005337.1 + 72971 0.76 0.286196
Target:  5'- aGCGCGGAcuuccuggucuCGUucauGAugGCGCGCGGCGc -3'
miRNA:   3'- cCGCGCCU-----------GCA----CUugCGCGCGCUGCa -5'
25512 3' -59 NC_005337.1 + 25449 0.74 0.334691
Target:  5'- cGCGCuucGGcacCGUGGACGCGUGCGugGa -3'
miRNA:   3'- cCGCG---CCu--GCACUUGCGCGCGCugCa -5'
25512 3' -59 NC_005337.1 + 72609 0.75 0.299463
Target:  5'- cGCGCGGGCGUGGugGUGCccGCcACGa -3'
miRNA:   3'- cCGCGCCUGCACUugCGCG--CGcUGCa -5'
25512 3' -59 NC_005337.1 + 35737 0.76 0.273397
Target:  5'- cGGCGUGGugGUGucguACGCgcuggGCGCGACc- -3'
miRNA:   3'- -CCGCGCCugCACu---UGCG-----CGCGCUGca -5'
25512 3' -59 NC_005337.1 + 130647 0.84 0.079172
Target:  5'- gGGCGCGGACGUGcGCGCGaGgGACGUc -3'
miRNA:   3'- -CCGCGCCUGCACuUGCGCgCgCUGCA- -5'
25512 3' -59 NC_005337.1 + 104291 0.75 0.299463
Target:  5'- cGCGCGGGCGguccgcGAGgGCGCGgCGGCGc -3'
miRNA:   3'- cCGCGCCUGCa-----CUUgCGCGC-GCUGCa -5'
25512 3' -59 NC_005337.1 + 127377 0.84 0.083388
Target:  5'- cGGCGCGGACccGcGCGCGCGCGACa- -3'
miRNA:   3'- -CCGCGCCUGcaCuUGCGCGCGCUGca -5'
25512 3' -59 NC_005337.1 + 131898 0.76 0.261062
Target:  5'- gGGCGCGcACGUGGACGCGgucgaccggugcUGCGGCGc -3'
miRNA:   3'- -CCGCGCcUGCACUUGCGC------------GCGCUGCa -5'
25512 3' -59 NC_005337.1 + 108537 0.75 0.320246
Target:  5'- cGGCGC-GACGgugcgGGGCGCGCGCcuGACGc -3'
miRNA:   3'- -CCGCGcCUGCa----CUUGCGCGCG--CUGCa -5'
25512 3' -59 NC_005337.1 + 100401 0.74 0.357242
Target:  5'- uGCGCGGGCGcGcgcuacgagaucGACGCGCGCcACGUg -3'
miRNA:   3'- cCGCGCCUGCaC------------UUGCGCGCGcUGCA- -5'
25512 3' -59 NC_005337.1 + 130961 0.81 0.128873
Target:  5'- cGGCGUGGcCGUGGACGUGCGCaACGc -3'
miRNA:   3'- -CCGCGCCuGCACUUGCGCGCGcUGCa -5'
25512 3' -59 NC_005337.1 + 58879 0.78 0.210591
Target:  5'- aGCGCGGuACGUGAACGUgcacuucguggugGCGCGGCa- -3'
miRNA:   3'- cCGCGCC-UGCACUUGCG-------------CGCGCUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.