Results 41 - 60 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25512 | 5' | -55.8 | NC_005337.1 | + | 126867 | 0.69 | 0.742151 |
Target: 5'- -gACGCCGCUGCACcuCUGCGUgCu- -3' miRNA: 3'- ugUGCGGUGACGUGacGAUGCAgGuc -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 45947 | 0.69 | 0.742151 |
Target: 5'- cGCGCGCCg--GCGC-GCgugGCGUCCAc -3' miRNA: 3'- -UGUGCGGugaCGUGaCGa--UGCAGGUc -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 50312 | 0.68 | 0.752003 |
Target: 5'- cGCGcCGCCGCUGCcCUGCgcggacCGcCCGGu -3' miRNA: 3'- -UGU-GCGGUGACGuGACGau----GCaGGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 37245 | 0.68 | 0.752003 |
Target: 5'- aGCACGuCCACgucGCAgUUGCgguUGUCCAGg -3' miRNA: 3'- -UGUGC-GGUGa--CGU-GACGau-GCAGGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 86388 | 0.68 | 0.761745 |
Target: 5'- aACAUGuCCGCcagGCgGCUGCgcGCGUCCGGc -3' miRNA: 3'- -UGUGC-GGUGa--CG-UGACGa-UGCAGGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 122149 | 0.68 | 0.761745 |
Target: 5'- cACACGCCGCUGUACUaCgcCG-CCAu -3' miRNA: 3'- -UGUGCGGUGACGUGAcGauGCaGGUc -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 100283 | 0.68 | 0.761745 |
Target: 5'- -gACGCCGCUggagacGCGCauccuggGCUGCGUCCc- -3' miRNA: 3'- ugUGCGGUGA------CGUGa------CGAUGCAGGuc -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 95928 | 0.68 | 0.761745 |
Target: 5'- cGCGCGCCuc-GCGCU-CcACGUCCAGc -3' miRNA: 3'- -UGUGCGGugaCGUGAcGaUGCAGGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 127970 | 0.68 | 0.761745 |
Target: 5'- cCGCGCCAUgcgcgaggUGCGCUGCaACG-CCGa -3' miRNA: 3'- uGUGCGGUG--------ACGUGACGaUGCaGGUc -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 47966 | 0.68 | 0.780862 |
Target: 5'- cGCGCGCgAgUGCGgcGCggacGCGUCCAGg -3' miRNA: 3'- -UGUGCGgUgACGUgaCGa---UGCAGGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 6567 | 0.68 | 0.780862 |
Target: 5'- -gACGCCA--GCGCUGCgcgGUCCGGa -3' miRNA: 3'- ugUGCGGUgaCGUGACGaugCAGGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 130788 | 0.68 | 0.780862 |
Target: 5'- gGCGcCGCCGgUGCgGCUGCUGCGcuucUUCGGc -3' miRNA: 3'- -UGU-GCGGUgACG-UGACGAUGC----AGGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 87965 | 0.68 | 0.780862 |
Target: 5'- -uGCGCCugcACgggGCGCUGCUGCGgUUCAc -3' miRNA: 3'- ugUGCGG---UGa--CGUGACGAUGC-AGGUc -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 44304 | 0.68 | 0.789289 |
Target: 5'- -gGCGCCGCUcccccgaGCGCgUGCUGCGgCCGc -3' miRNA: 3'- ugUGCGGUGA-------CGUG-ACGAUGCaGGUc -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 59733 | 0.68 | 0.790218 |
Target: 5'- cACGCGCCGCgcgGCGgaGC-GCGUCUc- -3' miRNA: 3'- -UGUGCGGUGa--CGUgaCGaUGCAGGuc -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 132194 | 0.68 | 0.790218 |
Target: 5'- cGCGCGCCGacaccgUGCgccuGCUGCUGCGgcaCGGg -3' miRNA: 3'- -UGUGCGGUg-----ACG----UGACGAUGCag-GUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 129922 | 0.68 | 0.799426 |
Target: 5'- aACAcCGCCGcCUGCGaaaaGCUcauCGUCCAGg -3' miRNA: 3'- -UGU-GCGGU-GACGUga--CGAu--GCAGGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 11673 | 0.68 | 0.799426 |
Target: 5'- aACACGCCGCcGC-CcGCgugGUCCAGg -3' miRNA: 3'- -UGUGCGGUGaCGuGaCGaugCAGGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 91256 | 0.68 | 0.799426 |
Target: 5'- gACACGCUAgaGUGCaGCUGCGUgagccgcaCCAGc -3' miRNA: 3'- -UGUGCGGUgaCGUGaCGAUGCA--------GGUC- -5' |
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25512 | 5' | -55.8 | NC_005337.1 | + | 44940 | 0.67 | 0.80668 |
Target: 5'- cAUGCGCCACcuguuuaUGCACUucugcgagcaccgGCUGCGcUCCAa -3' miRNA: 3'- -UGUGCGGUG-------ACGUGA-------------CGAUGC-AGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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