Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25516 | 3' | -54.6 | NC_005337.1 | + | 75620 | 0.66 | 0.923857 |
Target: 5'- gAGCUugGcGCGCgUGUCccGCGUGCg -3' miRNA: 3'- gUCGAugCcUGCGaGUAGcaCGCACG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 128471 | 0.66 | 0.923857 |
Target: 5'- cCGGC-GCGGGagaccgcgUGCUCG-CGgGCGUGCg -3' miRNA: 3'- -GUCGaUGCCU--------GCGAGUaGCaCGCACG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 15701 | 0.66 | 0.923857 |
Target: 5'- aCAGCacgACGuGcCGgaCGUCGUGCGaGCg -3' miRNA: 3'- -GUCGa--UGC-CuGCgaGUAGCACGCaCG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 35324 | 0.66 | 0.918193 |
Target: 5'- aCGGCgccGCGGAC-C-CAggCGUGCGUGg -3' miRNA: 3'- -GUCGa--UGCCUGcGaGUa-GCACGCACg -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 14796 | 0.66 | 0.918193 |
Target: 5'- gGGC-GCGGuguUGUUC-UCGUGCGUGa -3' miRNA: 3'- gUCGaUGCCu--GCGAGuAGCACGCACg -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 42637 | 0.66 | 0.918193 |
Target: 5'- gCGGUggucgACGGcUGCUC--CGUGCGUGUc -3' miRNA: 3'- -GUCGa----UGCCuGCGAGuaGCACGCACG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 89820 | 0.67 | 0.912284 |
Target: 5'- uCAGCUcgGCGaGGCGCUCGaCGUccuccgGCG-GCg -3' miRNA: 3'- -GUCGA--UGC-CUGCGAGUaGCA------CGCaCG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 16141 | 0.67 | 0.912284 |
Target: 5'- aCGGCgacgugACGGACGC--AUCGUGaUGUGa -3' miRNA: 3'- -GUCGa-----UGCCUGCGagUAGCAC-GCACg -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 10970 | 0.67 | 0.912284 |
Target: 5'- uGGCcgGCGGAucCGCgCAgcgCGUGCG-GCa -3' miRNA: 3'- gUCGa-UGCCU--GCGaGUa--GCACGCaCG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 53657 | 0.67 | 0.90613 |
Target: 5'- -cGCcACGcGCGCUUcgCG-GCGUGCu -3' miRNA: 3'- guCGaUGCcUGCGAGuaGCaCGCACG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 33105 | 0.67 | 0.905501 |
Target: 5'- -cGCUGCccuguguGGugGUUCAUCGUGguagGUGUg -3' miRNA: 3'- guCGAUG-------CCugCGAGUAGCACg---CACG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 39845 | 0.67 | 0.899734 |
Target: 5'- uGGuCUGCGGAgugcugcugcuCGcCUCcgCGUGUGUGUu -3' miRNA: 3'- gUC-GAUGCCU-----------GC-GAGuaGCACGCACG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 92387 | 0.67 | 0.899734 |
Target: 5'- uCGGUUuuGGACGCgaCGUCGggGaCGUGCu -3' miRNA: 3'- -GUCGAugCCUGCGa-GUAGCa-C-GCACG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 133135 | 0.67 | 0.899734 |
Target: 5'- -cGCUccccGCGGA-GCUgGUCGcgcGCGUGCu -3' miRNA: 3'- guCGA----UGCCUgCGAgUAGCa--CGCACG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 57295 | 0.67 | 0.899734 |
Target: 5'- gCGGCUGCGGcgcCGCUC-UCGgaaccGCGcgGCc -3' miRNA: 3'- -GUCGAUGCCu--GCGAGuAGCa----CGCa-CG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 35120 | 0.67 | 0.893099 |
Target: 5'- gCGGC-GCGGACGCcCA--GUGCG-GCg -3' miRNA: 3'- -GUCGaUGCCUGCGaGUagCACGCaCG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 97941 | 0.67 | 0.891063 |
Target: 5'- -cGC-GCGGACGCUCuaCGUGUucccgaccuccuccGUGCg -3' miRNA: 3'- guCGaUGCCUGCGAGuaGCACG--------------CACG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 132619 | 0.67 | 0.886229 |
Target: 5'- gCGGCgGCGGccaaGCUCGUCGccGCGgGCg -3' miRNA: 3'- -GUCGaUGCCug--CGAGUAGCa-CGCaCG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 45798 | 0.67 | 0.886229 |
Target: 5'- aCAGCUuggcgagcGCGGAguucUGCUCcUCGacgGCGUGUu -3' miRNA: 3'- -GUCGA--------UGCCU----GCGAGuAGCa--CGCACG- -5' |
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25516 | 3' | -54.6 | NC_005337.1 | + | 24278 | 0.67 | 0.879126 |
Target: 5'- uCAGCUGgcCGG-CGCUCAcgcagggCGUG-GUGCu -3' miRNA: 3'- -GUCGAU--GCCuGCGAGUa------GCACgCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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