Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25519 | 3' | -55.2 | NC_005337.1 | + | 123438 | 1.07 | 0.00324 |
Target: 5'- gUAGACCCGCACAGAGAUGCGCUAGACc -3' miRNA: 3'- -AUCUGGGCGUGUCUCUACGCGAUCUG- -5' |
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25519 | 3' | -55.2 | NC_005337.1 | + | 23168 | 0.76 | 0.347697 |
Target: 5'- -uGACCCGCGUGGAGgcGCuGCUGGACg -3' miRNA: 3'- auCUGGGCGUGUCUCuaCG-CGAUCUG- -5' |
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25519 | 3' | -55.2 | NC_005337.1 | + | 117830 | 0.75 | 0.380742 |
Target: 5'- gGGACCCGgGCGG-GGUGCGCacgcAGGCg -3' miRNA: 3'- aUCUGGGCgUGUCuCUACGCGa---UCUG- -5' |
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25519 | 3' | -55.2 | NC_005337.1 | + | 104044 | 0.74 | 0.422159 |
Target: 5'- -uGACCCGCACAGAGAUcgagaccgugugucGCGCcaucGACc -3' miRNA: 3'- auCUGGGCGUGUCUCUA--------------CGCGau--CUG- -5' |
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25519 | 3' | -55.2 | NC_005337.1 | + | 127965 | 0.74 | 0.470994 |
Target: 5'- gAGAUCCGCGCcaugcgcGAGGUGCGCUGcaacgccGACa -3' miRNA: 3'- aUCUGGGCGUGu------CUCUACGCGAU-------CUG- -5' |
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25519 | 3' | -55.2 | NC_005337.1 | + | 83998 | 0.74 | 0.471961 |
Target: 5'- cUGGGCCUGCACGGGGcacacugGCGCUucugcggcgGGACa -3' miRNA: 3'- -AUCUGGGCGUGUCUCua-----CGCGA---------UCUG- -5' |
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25519 | 3' | -55.2 | NC_005337.1 | + | 130616 | 0.73 | 0.48169 |
Target: 5'- aAGACCCccgacuGCGCGGAcgacgaggccGcgGCGCUGGACg -3' miRNA: 3'- aUCUGGG------CGUGUCU----------CuaCGCGAUCUG- -5' |
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25519 | 3' | -55.2 | NC_005337.1 | + | 24518 | 0.73 | 0.531686 |
Target: 5'- --aGCCCGUgcccaagccgGCGGAGAUGCGCgAGAUg -3' miRNA: 3'- aucUGGGCG----------UGUCUCUACGCGaUCUG- -5' |
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25519 | 3' | -55.2 | NC_005337.1 | + | 66074 | 0.72 | 0.552216 |
Target: 5'- cGGGCCCGCAgcggcgccccCGGGGccGCGCUcaGGGCg -3' miRNA: 3'- aUCUGGGCGU----------GUCUCuaCGCGA--UCUG- -5' |
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25519 | 3' | -55.2 | NC_005337.1 | + | 61957 | 0.72 | 0.57298 |
Target: 5'- cAGGUCCGUgaacaugucGCAGAGGUGCcgGCUGGACa -3' miRNA: 3'- aUCUGGGCG---------UGUCUCUACG--CGAUCUG- -5' |
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25519 | 3' | -55.2 | NC_005337.1 | + | 127030 | 0.71 | 0.589722 |
Target: 5'- gAGACCaugcuggcggcggGCGCGGAGGUGCGCaccgaAGGCg -3' miRNA: 3'- aUCUGGg------------CGUGUCUCUACGCGa----UCUG- -5' |
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25519 | 3' | -55.2 | NC_005337.1 | + | 48306 | 0.71 | 0.604441 |
Target: 5'- gAGuACCUccagcgggGCACGGGGAUGUGCgUGGACu -3' miRNA: 3'- aUC-UGGG--------CGUGUCUCUACGCG-AUCUG- -5' |
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25519 | 3' | -55.2 | NC_005337.1 | + | 25104 | 0.71 | 0.614982 |
Target: 5'- --cGCCCGCGCGGcGcgGCGCgcgcGGACg -3' miRNA: 3'- aucUGGGCGUGUCuCuaCGCGa---UCUG- -5' |
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25519 | 3' | -55.2 | NC_005337.1 | + | 85177 | 0.71 | 0.614982 |
Target: 5'- -uGACCuCGCGCAcGAGcUGCGCgauggAGGCg -3' miRNA: 3'- auCUGG-GCGUGU-CUCuACGCGa----UCUG- -5' |
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25519 | 3' | -55.2 | NC_005337.1 | + | 99162 | 0.71 | 0.62448 |
Target: 5'- cUGGGCguccgcgCCGCGCGGAcGAUGCGCgucgAGAUc -3' miRNA: 3'- -AUCUG-------GGCGUGUCU-CUACGCGa---UCUG- -5' |
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25519 | 3' | -55.2 | NC_005337.1 | + | 90731 | 0.71 | 0.635041 |
Target: 5'- gAGACCCGCGucCAGugcuGGAUGCGCUccuccacGGAg -3' miRNA: 3'- aUCUGGGCGU--GUC----UCUACGCGA-------UCUg -5' |
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25519 | 3' | -55.2 | NC_005337.1 | + | 38804 | 0.71 | 0.636097 |
Target: 5'- aUGGACUggcugCGCACGGGGcgcuacgccGCGCUGGACg -3' miRNA: 3'- -AUCUGG-----GCGUGUCUCua-------CGCGAUCUG- -5' |
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25519 | 3' | -55.2 | NC_005337.1 | + | 132944 | 0.7 | 0.657198 |
Target: 5'- -cGACCCGCucuGCAGc---GCGCUGGACc -3' miRNA: 3'- auCUGGGCG---UGUCucuaCGCGAUCUG- -5' |
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25519 | 3' | -55.2 | NC_005337.1 | + | 107936 | 0.7 | 0.678214 |
Target: 5'- aGGGCCCGCugAugcGGcUGCuGCUGGACa -3' miRNA: 3'- aUCUGGGCGugUc--UCuACG-CGAUCUG- -5' |
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25519 | 3' | -55.2 | NC_005337.1 | + | 90492 | 0.7 | 0.678214 |
Target: 5'- cAGACCuUGguCAG-GAUGCGCgAGACg -3' miRNA: 3'- aUCUGG-GCguGUCuCUACGCGaUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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