miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25519 3' -55.2 NC_005337.1 + 120924 0.67 0.858622
Target:  5'- cUGGACCUGCACcucaaggagcGGGGGUG-GCUGauGGCg -3'
miRNA:   3'- -AUCUGGGCGUG----------UCUCUACgCGAU--CUG- -5'
25519 3' -55.2 NC_005337.1 + 80528 0.68 0.80642
Target:  5'- gAGGCCCgggGCGCGGAGAUGUccacccgGCagaGGGCg -3'
miRNA:   3'- aUCUGGG---CGUGUCUCUACG-------CGa--UCUG- -5'
25519 3' -55.2 NC_005337.1 + 110857 0.67 0.825198
Target:  5'- --cGCCCGUugACGGGGAUGUGCUuguacgucuGGCa -3'
miRNA:   3'- aucUGGGCG--UGUCUCUACGCGAu--------CUG- -5'
25519 3' -55.2 NC_005337.1 + 48288 0.67 0.842316
Target:  5'- cUGGACCCGCggucgcgccuccGCAuGcGGUGCGC-GGGCg -3'
miRNA:   3'- -AUCUGGGCG------------UGU-CuCUACGCGaUCUG- -5'
25519 3' -55.2 NC_005337.1 + 44837 0.67 0.842316
Target:  5'- aUAGAgCCGCACAGGaaccuaacuguGAcGCccauGCUGGACa -3'
miRNA:   3'- -AUCUgGGCGUGUCU-----------CUaCG----CGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 117239 0.67 0.842316
Target:  5'- cAGA-CCGCGCGGAacgcgacgcaGugcGCGCUGGACg -3'
miRNA:   3'- aUCUgGGCGUGUCU----------Cua-CGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 128467 0.67 0.842316
Target:  5'- cGGACCgGCGCgGGAGAccgcGUGCUcgcGGGCg -3'
miRNA:   3'- aUCUGGgCGUG-UCUCUa---CGCGA---UCUG- -5'
25519 3' -55.2 NC_005337.1 + 9689 0.67 0.850575
Target:  5'- gGGGCuuGCccGCAGGGuaGCGCUuGGACg -3'
miRNA:   3'- aUCUGggCG--UGUCUCuaCGCGA-UCUG- -5'
25519 3' -55.2 NC_005337.1 + 50373 0.67 0.858622
Target:  5'- cGGGCCCGgGCAcGGGcgccugGCGCggGGGCg -3'
miRNA:   3'- aUCUGGGCgUGU-CUCua----CGCGa-UCUG- -5'
25519 3' -55.2 NC_005337.1 + 83495 0.68 0.769647
Target:  5'- gAGGCCCGCAUAGucguaGGAggGCGCgAGGu -3'
miRNA:   3'- aUCUGGGCGUGUC-----UCUa-CGCGaUCUg -5'
25519 3' -55.2 NC_005337.1 + 84700 0.69 0.729877
Target:  5'- -cGAUCC-CACGGAcccgGCGCUGGACa -3'
miRNA:   3'- auCUGGGcGUGUCUcua-CGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 4113 0.69 0.719684
Target:  5'- --cGCgCGCGCGGAGAcGCGC-GGACa -3'
miRNA:   3'- aucUGgGCGUGUCUCUaCGCGaUCUG- -5'
25519 3' -55.2 NC_005337.1 + 83998 0.74 0.471961
Target:  5'- cUGGGCCUGCACGGGGcacacugGCGCUucugcggcgGGACa -3'
miRNA:   3'- -AUCUGGGCGUGUCUCua-----CGCGA---------UCUG- -5'
25519 3' -55.2 NC_005337.1 + 130616 0.73 0.48169
Target:  5'- aAGACCCccgacuGCGCGGAcgacgaggccGcgGCGCUGGACg -3'
miRNA:   3'- aUCUGGG------CGUGUCU----------CuaCGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 61957 0.72 0.57298
Target:  5'- cAGGUCCGUgaacaugucGCAGAGGUGCcgGCUGGACa -3'
miRNA:   3'- aUCUGGGCG---------UGUCUCUACG--CGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 85177 0.71 0.614982
Target:  5'- -uGACCuCGCGCAcGAGcUGCGCgauggAGGCg -3'
miRNA:   3'- auCUGG-GCGUGU-CUCuACGCGa----UCUG- -5'
25519 3' -55.2 NC_005337.1 + 99162 0.71 0.62448
Target:  5'- cUGGGCguccgcgCCGCGCGGAcGAUGCGCgucgAGAUc -3'
miRNA:   3'- -AUCUG-------GGCGUGUCU-CUACGCGa---UCUG- -5'
25519 3' -55.2 NC_005337.1 + 90492 0.7 0.678214
Target:  5'- cAGACCuUGguCAG-GAUGCGCgAGACg -3'
miRNA:   3'- aUCUGG-GCguGUCuCUACGCGaUCUG- -5'
25519 3' -55.2 NC_005337.1 + 96871 0.7 0.688667
Target:  5'- -cGACuCCGCGCGGA--UGCGCggcgUGGACg -3'
miRNA:   3'- auCUG-GGCGUGUCUcuACGCG----AUCUG- -5'
25519 3' -55.2 NC_005337.1 + 121797 0.69 0.709411
Target:  5'- cGGugCgGaCGCGGAG--GCGCUGGACg -3'
miRNA:   3'- aUCugGgC-GUGUCUCuaCGCGAUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.