miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25519 3' -55.2 NC_005337.1 + 130616 0.73 0.48169
Target:  5'- aAGACCCccgacuGCGCGGAcgacgaggccGcgGCGCUGGACg -3'
miRNA:   3'- aUCUGGG------CGUGUCU----------CuaCGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 61957 0.72 0.57298
Target:  5'- cAGGUCCGUgaacaugucGCAGAGGUGCcgGCUGGACa -3'
miRNA:   3'- aUCUGGGCG---------UGUCUCUACG--CGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 85177 0.71 0.614982
Target:  5'- -uGACCuCGCGCAcGAGcUGCGCgauggAGGCg -3'
miRNA:   3'- auCUGG-GCGUGU-CUCuACGCGa----UCUG- -5'
25519 3' -55.2 NC_005337.1 + 99162 0.71 0.62448
Target:  5'- cUGGGCguccgcgCCGCGCGGAcGAUGCGCgucgAGAUc -3'
miRNA:   3'- -AUCUG-------GGCGUGUCU-CUACGCGa---UCUG- -5'
25519 3' -55.2 NC_005337.1 + 90492 0.7 0.678214
Target:  5'- cAGACCuUGguCAG-GAUGCGCgAGACg -3'
miRNA:   3'- aUCUGG-GCguGUCuCUACGCGaUCUG- -5'
25519 3' -55.2 NC_005337.1 + 96871 0.7 0.688667
Target:  5'- -cGACuCCGCGCGGA--UGCGCggcgUGGACg -3'
miRNA:   3'- auCUG-GGCGUGUCUcuACGCG----AUCUG- -5'
25519 3' -55.2 NC_005337.1 + 121797 0.69 0.709411
Target:  5'- cGGugCgGaCGCGGAG--GCGCUGGACg -3'
miRNA:   3'- aUCugGgC-GUGUCUCuaCGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 44837 0.67 0.842316
Target:  5'- aUAGAgCCGCACAGGaaccuaacuguGAcGCccauGCUGGACa -3'
miRNA:   3'- -AUCUgGGCGUGUCU-----------CUaCG----CGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 48288 0.67 0.842316
Target:  5'- cUGGACCCGCggucgcgccuccGCAuGcGGUGCGC-GGGCg -3'
miRNA:   3'- -AUCUGGGCG------------UGU-CuCUACGCGaUCUG- -5'
25519 3' -55.2 NC_005337.1 + 110857 0.67 0.825198
Target:  5'- --cGCCCGUugACGGGGAUGUGCUuguacgucuGGCa -3'
miRNA:   3'- aucUGGGCG--UGUCUCUACGCGAu--------CUG- -5'
25519 3' -55.2 NC_005337.1 + 80528 0.68 0.80642
Target:  5'- gAGGCCCgggGCGCGGAGAUGUccacccgGCagaGGGCg -3'
miRNA:   3'- aUCUGGG---CGUGUCUCUACG-------CGa--UCUG- -5'
25519 3' -55.2 NC_005337.1 + 83495 0.68 0.769647
Target:  5'- gAGGCCCGCAUAGucguaGGAggGCGCgAGGu -3'
miRNA:   3'- aUCUGGGCGUGUC-----UCUa-CGCGaUCUg -5'
25519 3' -55.2 NC_005337.1 + 84700 0.69 0.729877
Target:  5'- -cGAUCC-CACGGAcccgGCGCUGGACa -3'
miRNA:   3'- auCUGGGcGUGUCUcua-CGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 4113 0.69 0.719684
Target:  5'- --cGCgCGCGCGGAGAcGCGC-GGACa -3'
miRNA:   3'- aucUGgGCGUGUCUCUaCGCGaUCUG- -5'
25519 3' -55.2 NC_005337.1 + 66074 0.72 0.552216
Target:  5'- cGGGCCCGCAgcggcgccccCGGGGccGCGCUcaGGGCg -3'
miRNA:   3'- aUCUGGGCGU----------GUCUCuaCGCGA--UCUG- -5'
25519 3' -55.2 NC_005337.1 + 24518 0.73 0.531686
Target:  5'- --aGCCCGUgcccaagccgGCGGAGAUGCGCgAGAUg -3'
miRNA:   3'- aucUGGGCG----------UGUCUCUACGCGaUCUG- -5'
25519 3' -55.2 NC_005337.1 + 127965 0.74 0.470994
Target:  5'- gAGAUCCGCGCcaugcgcGAGGUGCGCUGcaacgccGACa -3'
miRNA:   3'- aUCUGGGCGUGu------CUCUACGCGAU-------CUG- -5'
25519 3' -55.2 NC_005337.1 + 104044 0.74 0.422159
Target:  5'- -uGACCCGCACAGAGAUcgagaccgugugucGCGCcaucGACc -3'
miRNA:   3'- auCUGGGCGUGUCUCUA--------------CGCGau--CUG- -5'
25519 3' -55.2 NC_005337.1 + 117830 0.75 0.380742
Target:  5'- gGGACCCGgGCGG-GGUGCGCacgcAGGCg -3'
miRNA:   3'- aUCUGGGCgUGUCuCUACGCGa---UCUG- -5'
25519 3' -55.2 NC_005337.1 + 127382 0.66 0.895469
Target:  5'- cGGACCCGCGCGc----GCGCgacaUGGACg -3'
miRNA:   3'- aUCUGGGCGUGUcucuaCGCG----AUCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.