miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25519 3' -55.2 NC_005337.1 + 57271 0.68 0.807331
Target:  5'- cGGGgCCGCGCGGGGccgGCGCgcgcGGCu -3'
miRNA:   3'- aUCUgGGCGUGUCUCua-CGCGau--CUG- -5'
25519 3' -55.2 NC_005337.1 + 58195 0.67 0.858622
Target:  5'- cAGGCCCGCguggccgaGCGGaAGAUGggcgaGCUGGAg -3'
miRNA:   3'- aUCUGGGCG--------UGUC-UCUACg----CGAUCUg -5'
25519 3' -55.2 NC_005337.1 + 59842 0.66 0.866452
Target:  5'- gAGAUCCGgcgguaGCGGucGAUGCGCcggUAGACg -3'
miRNA:   3'- aUCUGGGCg-----UGUCu-CUACGCG---AUCUG- -5'
25519 3' -55.2 NC_005337.1 + 61957 0.72 0.57298
Target:  5'- cAGGUCCGUgaacaugucGCAGAGGUGCcgGCUGGACa -3'
miRNA:   3'- aUCUGGGCG---------UGUCUCUACG--CGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 63391 0.66 0.866452
Target:  5'- -uGGCgC-CGCAGAGc-GCGCUGGACa -3'
miRNA:   3'- auCUGgGcGUGUCUCuaCGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 66074 0.72 0.552216
Target:  5'- cGGGCCCGCAgcggcgccccCGGGGccGCGCUcaGGGCg -3'
miRNA:   3'- aUCUGGGCGU----------GUCUCuaCGCGA--UCUG- -5'
25519 3' -55.2 NC_005337.1 + 68541 0.66 0.866452
Target:  5'- -cGugCCGCGCuAGuGAcgGCGCcGGGCg -3'
miRNA:   3'- auCugGGCGUG-UCuCUa-CGCGaUCUG- -5'
25519 3' -55.2 NC_005337.1 + 71328 0.66 0.874057
Target:  5'- -cGACCCGCGCGGcGGcgGUGCa---- -3'
miRNA:   3'- auCUGGGCGUGUC-UCuaCGCGaucug -5'
25519 3' -55.2 NC_005337.1 + 76810 0.66 0.866452
Target:  5'- aGGugCgCGCGCuu-GAUGCGC-AGGCg -3'
miRNA:   3'- aUCugG-GCGUGucuCUACGCGaUCUG- -5'
25519 3' -55.2 NC_005337.1 + 77209 0.68 0.779288
Target:  5'- -uGAUCCGCACGcgcgagggguuGAGGUGCGUcaggaAGACg -3'
miRNA:   3'- auCUGGGCGUGU-----------CUCUACGCGa----UCUG- -5'
25519 3' -55.2 NC_005337.1 + 78542 0.66 0.866452
Target:  5'- aUGGACCCGUACAcGGGcgcgccGUGCGCg---- -3'
miRNA:   3'- -AUCUGGGCGUGU-CUC------UACGCGaucug -5'
25519 3' -55.2 NC_005337.1 + 80528 0.68 0.80642
Target:  5'- gAGGCCCgggGCGCGGAGAUGUccacccgGCagaGGGCg -3'
miRNA:   3'- aUCUGGG---CGUGUCUCUACG-------CGa--UCUG- -5'
25519 3' -55.2 NC_005337.1 + 83495 0.68 0.769647
Target:  5'- gAGGCCCGCAUAGucguaGGAggGCGCgAGGu -3'
miRNA:   3'- aUCUGGGCGUGUC-----UCUa-CGCGaUCUg -5'
25519 3' -55.2 NC_005337.1 + 83998 0.74 0.471961
Target:  5'- cUGGGCCUGCACGGGGcacacugGCGCUucugcggcgGGACa -3'
miRNA:   3'- -AUCUGGGCGUGUCUCua-----CGCGA---------UCUG- -5'
25519 3' -55.2 NC_005337.1 + 84048 0.66 0.874057
Target:  5'- gAGGCgCGCACgacgcccucGGGGAgGCGCaGGGCg -3'
miRNA:   3'- aUCUGgGCGUG---------UCUCUaCGCGaUCUG- -5'
25519 3' -55.2 NC_005337.1 + 84700 0.69 0.729877
Target:  5'- -cGAUCC-CACGGAcccgGCGCUGGACa -3'
miRNA:   3'- auCUGGGcGUGUCUcua-CGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 85177 0.71 0.614982
Target:  5'- -uGACCuCGCGCAcGAGcUGCGCgauggAGGCg -3'
miRNA:   3'- auCUGG-GCGUGU-CUCuACGCGa----UCUG- -5'
25519 3' -55.2 NC_005337.1 + 87640 0.66 0.88857
Target:  5'- -cGACUCGCGgAGGuuGGUGCGgaAGAUg -3'
miRNA:   3'- auCUGGGCGUgUCU--CUACGCgaUCUG- -5'
25519 3' -55.2 NC_005337.1 + 88510 0.67 0.842316
Target:  5'- aUGGACagcgCCGCgcgguacgaacGCGGGGccGUGCUAGACg -3'
miRNA:   3'- -AUCUG----GGCG-----------UGUCUCuaCGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 88950 0.66 0.874057
Target:  5'- cGGA-CCGCGCGGAG--GCGgaGGGCg -3'
miRNA:   3'- aUCUgGGCGUGUCUCuaCGCgaUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.