miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25519 3' -55.2 NC_005337.1 + 1157 0.66 0.881432
Target:  5'- gGGAgCgCGCcgGCGGAGcgGCccGCUAGGCg -3'
miRNA:   3'- aUCUgG-GCG--UGUCUCuaCG--CGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 4113 0.69 0.719684
Target:  5'- --cGCgCGCGCGGAGAcGCGC-GGACa -3'
miRNA:   3'- aucUGgGCGUGUCUCUaCGCGaUCUG- -5'
25519 3' -55.2 NC_005337.1 + 6209 0.66 0.88857
Target:  5'- aAGGCgUGCACccuguccaGGAGG-GCGUUGGGCa -3'
miRNA:   3'- aUCUGgGCGUG--------UCUCUaCGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 9689 0.67 0.850575
Target:  5'- gGGGCuuGCccGCAGGGuaGCGCUuGGACg -3'
miRNA:   3'- aUCUGggCG--UGUCUCuaCGCGA-UCUG- -5'
25519 3' -55.2 NC_005337.1 + 10977 0.67 0.833854
Target:  5'- cGGAUCCGCGCAGcGcGUGCgGCacGGACa -3'
miRNA:   3'- aUCUGGGCGUGUCuC-UACG-CGa-UCUG- -5'
25519 3' -55.2 NC_005337.1 + 23168 0.76 0.347697
Target:  5'- -uGACCCGCGUGGAGgcGCuGCUGGACg -3'
miRNA:   3'- auCUGGGCGUGUCUCuaCG-CGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 24518 0.73 0.531686
Target:  5'- --aGCCCGUgcccaagccgGCGGAGAUGCGCgAGAUg -3'
miRNA:   3'- aucUGGGCG----------UGUCUCUACGCGaUCUG- -5'
25519 3' -55.2 NC_005337.1 + 25104 0.71 0.614982
Target:  5'- --cGCCCGCGCGGcGcgGCGCgcgcGGACg -3'
miRNA:   3'- aucUGGGCGUGUCuCuaCGCGa---UCUG- -5'
25519 3' -55.2 NC_005337.1 + 26995 0.66 0.895469
Target:  5'- cGGACCCGUccgGCAGccggaagcGGAUGUGCUccccGGCc -3'
miRNA:   3'- aUCUGGGCG---UGUC--------UCUACGCGAu---CUG- -5'
25519 3' -55.2 NC_005337.1 + 32094 0.69 0.73998
Target:  5'- ----aCCGCGCGGGGAUGaCGUgcgAGGCg -3'
miRNA:   3'- aucugGGCGUGUCUCUAC-GCGa--UCUG- -5'
25519 3' -55.2 NC_005337.1 + 35432 0.66 0.881432
Target:  5'- aUGGACgCGCACGGcgcGGUGgGCgcGACc -3'
miRNA:   3'- -AUCUGgGCGUGUCu--CUACgCGauCUG- -5'
25519 3' -55.2 NC_005337.1 + 38804 0.71 0.636097
Target:  5'- aUGGACUggcugCGCACGGGGcgcuacgccGCGCUGGACg -3'
miRNA:   3'- -AUCUGG-----GCGUGUCUCua-------CGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 40651 0.67 0.825198
Target:  5'- aGGuCCCGaCGCAGuGggGCGCccucUAGGCg -3'
miRNA:   3'- aUCuGGGC-GUGUCuCuaCGCG----AUCUG- -5'
25519 3' -55.2 NC_005337.1 + 43738 0.66 0.88857
Target:  5'- gAGAUCCGCACcGAGAaGCaGCUGa-- -3'
miRNA:   3'- aUCUGGGCGUGuCUCUaCG-CGAUcug -5'
25519 3' -55.2 NC_005337.1 + 44837 0.67 0.842316
Target:  5'- aUAGAgCCGCACAGGaaccuaacuguGAcGCccauGCUGGACa -3'
miRNA:   3'- -AUCUgGGCGUGUCU-----------CUaCG----CGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 48288 0.67 0.842316
Target:  5'- cUGGACCCGCggucgcgccuccGCAuGcGGUGCGC-GGGCg -3'
miRNA:   3'- -AUCUGGGCG------------UGU-CuCUACGCGaUCUG- -5'
25519 3' -55.2 NC_005337.1 + 48306 0.71 0.604441
Target:  5'- gAGuACCUccagcgggGCACGGGGAUGUGCgUGGACu -3'
miRNA:   3'- aUC-UGGG--------CGUGUCUCUACGCG-AUCUG- -5'
25519 3' -55.2 NC_005337.1 + 50373 0.67 0.858622
Target:  5'- cGGGCCCGgGCAcGGGcgccugGCGCggGGGCg -3'
miRNA:   3'- aUCUGGGCgUGU-CUCua----CGCGa-UCUG- -5'
25519 3' -55.2 NC_005337.1 + 53902 0.66 0.881432
Target:  5'- cGGcCCCGCugGCGGuGGaGaCGCUGGACg -3'
miRNA:   3'- aUCuGGGCG--UGUCuCUaC-GCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 54403 0.67 0.825198
Target:  5'- -cGACCUGC-CAGAGAUcaaGgGCaUGGGCa -3'
miRNA:   3'- auCUGGGCGuGUCUCUA---CgCG-AUCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.