miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25519 3' -55.2 NC_005337.1 + 132944 0.7 0.657198
Target:  5'- -cGACCCGCucuGCAGc---GCGCUGGACc -3'
miRNA:   3'- auCUGGGCG---UGUCucuaCGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 130616 0.73 0.48169
Target:  5'- aAGACCCccgacuGCGCGGAcgacgaggccGcgGCGCUGGACg -3'
miRNA:   3'- aUCUGGG------CGUGUCU----------CuaCGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 128467 0.67 0.842316
Target:  5'- cGGACCgGCGCgGGAGAccgcGUGCUcgcGGGCg -3'
miRNA:   3'- aUCUGGgCGUG-UCUCUa---CGCGA---UCUG- -5'
25519 3' -55.2 NC_005337.1 + 127965 0.74 0.470994
Target:  5'- gAGAUCCGCGCcaugcgcGAGGUGCGCUGcaacgccGACa -3'
miRNA:   3'- aUCUGGGCGUGu------CUCUACGCGAU-------CUG- -5'
25519 3' -55.2 NC_005337.1 + 127382 0.66 0.895469
Target:  5'- cGGACCCGCGCGc----GCGCgacaUGGACg -3'
miRNA:   3'- aUCUGGGCGUGUcucuaCGCG----AUCUG- -5'
25519 3' -55.2 NC_005337.1 + 127030 0.71 0.589722
Target:  5'- gAGACCaugcuggcggcggGCGCGGAGGUGCGCaccgaAGGCg -3'
miRNA:   3'- aUCUGGg------------CGUGUCUCUACGCGa----UCUG- -5'
25519 3' -55.2 NC_005337.1 + 123721 0.67 0.850575
Target:  5'- --cGCCCGUGCGGAagcaGAcGCuGCUGGACa -3'
miRNA:   3'- aucUGGGCGUGUCU----CUaCG-CGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 123438 1.07 0.00324
Target:  5'- gUAGACCCGCACAGAGAUGCGCUAGACc -3'
miRNA:   3'- -AUCUGGGCGUGUCUCUACGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 121797 0.69 0.709411
Target:  5'- cGGugCgGaCGCGGAG--GCGCUGGACg -3'
miRNA:   3'- aUCugGgC-GUGUCUCuaCGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 120924 0.67 0.858622
Target:  5'- cUGGACCUGCACcucaaggagcGGGGGUG-GCUGauGGCg -3'
miRNA:   3'- -AUCUGGGCGUG----------UCUCUACgCGAU--CUG- -5'
25519 3' -55.2 NC_005337.1 + 117830 0.75 0.380742
Target:  5'- gGGACCCGgGCGG-GGUGCGCacgcAGGCg -3'
miRNA:   3'- aUCUGGGCgUGUCuCUACGCGa---UCUG- -5'
25519 3' -55.2 NC_005337.1 + 117239 0.67 0.842316
Target:  5'- cAGA-CCGCGCGGAacgcgacgcaGugcGCGCUGGACg -3'
miRNA:   3'- aUCUgGGCGUGUCU----------Cua-CGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 112395 0.66 0.88857
Target:  5'- aGGAgCgCCGCGCAGGccGUGCGgUAGGCc -3'
miRNA:   3'- aUCU-G-GGCGUGUCUc-UACGCgAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 110857 0.67 0.825198
Target:  5'- --cGCCCGUugACGGGGAUGUGCUuguacgucuGGCa -3'
miRNA:   3'- aucUGGGCG--UGUCUCUACGCGAu--------CUG- -5'
25519 3' -55.2 NC_005337.1 + 107936 0.7 0.678214
Target:  5'- aGGGCCCGCugAugcGGcUGCuGCUGGACa -3'
miRNA:   3'- aUCUGGGCGugUc--UCuACG-CGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 104044 0.74 0.422159
Target:  5'- -uGACCCGCACAGAGAUcgagaccgugugucGCGCcaucGACc -3'
miRNA:   3'- auCUGGGCGUGUCUCUA--------------CGCGau--CUG- -5'
25519 3' -55.2 NC_005337.1 + 99162 0.71 0.62448
Target:  5'- cUGGGCguccgcgCCGCGCGGAcGAUGCGCgucgAGAUc -3'
miRNA:   3'- -AUCUG-------GGCGUGUCU-CUACGCGa---UCUG- -5'
25519 3' -55.2 NC_005337.1 + 99000 0.66 0.881432
Target:  5'- gUGGAgCCGCcCcccGAGGUGCGCgcGGCc -3'
miRNA:   3'- -AUCUgGGCGuGu--CUCUACGCGauCUG- -5'
25519 3' -55.2 NC_005337.1 + 98139 0.66 0.895469
Target:  5'- aUGGACCCGCacgccgcgcacgACAGGGugccUGCGCacuuGAUg -3'
miRNA:   3'- -AUCUGGGCG------------UGUCUCu---ACGCGau--CUG- -5'
25519 3' -55.2 NC_005337.1 + 96871 0.7 0.688667
Target:  5'- -cGACuCCGCGCGGA--UGCGCggcgUGGACg -3'
miRNA:   3'- auCUG-GGCGUGUCUcuACGCG----AUCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.