miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25519 3' -55.2 NC_005337.1 + 123438 1.07 0.00324
Target:  5'- gUAGACCCGCACAGAGAUGCGCUAGACc -3'
miRNA:   3'- -AUCUGGGCGUGUCUCUACGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 40651 0.67 0.825198
Target:  5'- aGGuCCCGaCGCAGuGggGCGCccucUAGGCg -3'
miRNA:   3'- aUCuGGGC-GUGUCuCuaCGCG----AUCUG- -5'
25519 3' -55.2 NC_005337.1 + 10977 0.67 0.833854
Target:  5'- cGGAUCCGCGCAGcGcGUGCgGCacGGACa -3'
miRNA:   3'- aUCUGGGCGUGUCuC-UACG-CGa-UCUG- -5'
25519 3' -55.2 NC_005337.1 + 127382 0.66 0.895469
Target:  5'- cGGACCCGCGCGc----GCGCgacaUGGACg -3'
miRNA:   3'- aUCUGGGCGUGUcucuaCGCG----AUCUG- -5'
25519 3' -55.2 NC_005337.1 + 24518 0.73 0.531686
Target:  5'- --aGCCCGUgcccaagccgGCGGAGAUGCGCgAGAUg -3'
miRNA:   3'- aucUGGGCG----------UGUCUCUACGCGaUCUG- -5'
25519 3' -55.2 NC_005337.1 + 66074 0.72 0.552216
Target:  5'- cGGGCCCGCAgcggcgccccCGGGGccGCGCUcaGGGCg -3'
miRNA:   3'- aUCUGGGCGU----------GUCUCuaCGCGA--UCUG- -5'
25519 3' -55.2 NC_005337.1 + 48306 0.71 0.604441
Target:  5'- gAGuACCUccagcgggGCACGGGGAUGUGCgUGGACu -3'
miRNA:   3'- aUC-UGGG--------CGUGUCUCUACGCG-AUCUG- -5'
25519 3' -55.2 NC_005337.1 + 25104 0.71 0.614982
Target:  5'- --cGCCCGCGCGGcGcgGCGCgcgcGGACg -3'
miRNA:   3'- aucUGGGCGUGUCuCuaCGCGa---UCUG- -5'
25519 3' -55.2 NC_005337.1 + 132944 0.7 0.657198
Target:  5'- -cGACCCGCucuGCAGc---GCGCUGGACc -3'
miRNA:   3'- auCUGGGCG---UGUCucuaCGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 57271 0.68 0.807331
Target:  5'- cGGGgCCGCGCGGGGccgGCGCgcgcGGCu -3'
miRNA:   3'- aUCUgGGCGUGUCUCua-CGCGau--CUG- -5'
25519 3' -55.2 NC_005337.1 + 91662 0.69 0.729877
Target:  5'- cGGugCCGCACAuGGcggGCGCUAG-Ca -3'
miRNA:   3'- aUCugGGCGUGUcUCua-CGCGAUCuG- -5'
25519 3' -55.2 NC_005337.1 + 38804 0.71 0.636097
Target:  5'- aUGGACUggcugCGCACGGGGcgcuacgccGCGCUGGACg -3'
miRNA:   3'- -AUCUGG-----GCGUGUCUCua-------CGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 117830 0.75 0.380742
Target:  5'- gGGACCCGgGCGG-GGUGCGCacgcAGGCg -3'
miRNA:   3'- aUCUGGGCgUGUCuCUACGCGa---UCUG- -5'
25519 3' -55.2 NC_005337.1 + 32094 0.69 0.73998
Target:  5'- ----aCCGCGCGGGGAUGaCGUgcgAGGCg -3'
miRNA:   3'- aucugGGCGUGUCUCUAC-GCGa--UCUG- -5'
25519 3' -55.2 NC_005337.1 + 104044 0.74 0.422159
Target:  5'- -uGACCCGCACAGAGAUcgagaccgugugucGCGCcaucGACc -3'
miRNA:   3'- auCUGGGCGUGUCUCUA--------------CGCGau--CUG- -5'
25519 3' -55.2 NC_005337.1 + 90731 0.71 0.635041
Target:  5'- gAGACCCGCGucCAGugcuGGAUGCGCUccuccacGGAg -3'
miRNA:   3'- aUCUGGGCGU--GUC----UCUACGCGA-------UCUg -5'
25519 3' -55.2 NC_005337.1 + 77209 0.68 0.779288
Target:  5'- -uGAUCCGCACGcgcgagggguuGAGGUGCGUcaggaAGACg -3'
miRNA:   3'- auCUGGGCGUGU-----------CUCUACGCGa----UCUG- -5'
25519 3' -55.2 NC_005337.1 + 54403 0.67 0.825198
Target:  5'- -cGACCUGC-CAGAGAUcaaGgGCaUGGGCa -3'
miRNA:   3'- auCUGGGCGuGUCUCUA---CgCG-AUCUG- -5'
25519 3' -55.2 NC_005337.1 + 127965 0.74 0.470994
Target:  5'- gAGAUCCGCGCcaugcgcGAGGUGCGCUGcaacgccGACa -3'
miRNA:   3'- aUCUGGGCGUGu------CUCUACGCGAU-------CUG- -5'
25519 3' -55.2 NC_005337.1 + 127030 0.71 0.589722
Target:  5'- gAGACCaugcuggcggcggGCGCGGAGGUGCGCaccgaAGGCg -3'
miRNA:   3'- aUCUGGg------------CGUGUCUCUACGCGa----UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.