miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25519 3' -55.2 NC_005337.1 + 58195 0.67 0.858622
Target:  5'- cAGGCCCGCguggccgaGCGGaAGAUGggcgaGCUGGAg -3'
miRNA:   3'- aUCUGGGCG--------UGUC-UCUACg----CGAUCUg -5'
25519 3' -55.2 NC_005337.1 + 120924 0.67 0.858622
Target:  5'- cUGGACCUGCACcucaaggagcGGGGGUG-GCUGauGGCg -3'
miRNA:   3'- -AUCUGGGCGUG----------UCUCUACgCGAU--CUG- -5'
25519 3' -55.2 NC_005337.1 + 50373 0.67 0.858622
Target:  5'- cGGGCCCGgGCAcGGGcgccugGCGCggGGGCg -3'
miRNA:   3'- aUCUGGGCgUGU-CUCua----CGCGa-UCUG- -5'
25519 3' -55.2 NC_005337.1 + 9689 0.67 0.850575
Target:  5'- gGGGCuuGCccGCAGGGuaGCGCUuGGACg -3'
miRNA:   3'- aUCUGggCG--UGUCUCuaCGCGA-UCUG- -5'
25519 3' -55.2 NC_005337.1 + 123721 0.67 0.850575
Target:  5'- --cGCCCGUGCGGAagcaGAcGCuGCUGGACa -3'
miRNA:   3'- aucUGGGCGUGUCU----CUaCG-CGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 48288 0.67 0.842316
Target:  5'- cUGGACCCGCggucgcgccuccGCAuGcGGUGCGC-GGGCg -3'
miRNA:   3'- -AUCUGGGCG------------UGU-CuCUACGCGaUCUG- -5'
25519 3' -55.2 NC_005337.1 + 117239 0.67 0.842316
Target:  5'- cAGA-CCGCGCGGAacgcgacgcaGugcGCGCUGGACg -3'
miRNA:   3'- aUCUgGGCGUGUCU----------Cua-CGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 44837 0.67 0.842316
Target:  5'- aUAGAgCCGCACAGGaaccuaacuguGAcGCccauGCUGGACa -3'
miRNA:   3'- -AUCUgGGCGUGUCU-----------CUaCG----CGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 128467 0.67 0.842316
Target:  5'- cGGACCgGCGCgGGAGAccgcGUGCUcgcGGGCg -3'
miRNA:   3'- aUCUGGgCGUG-UCUCUa---CGCGA---UCUG- -5'
25519 3' -55.2 NC_005337.1 + 88510 0.67 0.842316
Target:  5'- aUGGACagcgCCGCgcgguacgaacGCGGGGccGUGCUAGACg -3'
miRNA:   3'- -AUCUG----GGCG-----------UGUCUCuaCGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 10977 0.67 0.833854
Target:  5'- cGGAUCCGCGCAGcGcGUGCgGCacGGACa -3'
miRNA:   3'- aUCUGGGCGUGUCuC-UACG-CGa-UCUG- -5'
25519 3' -55.2 NC_005337.1 + 54403 0.67 0.825198
Target:  5'- -cGACCUGC-CAGAGAUcaaGgGCaUGGGCa -3'
miRNA:   3'- auCUGGGCGuGUCUCUA---CgCG-AUCUG- -5'
25519 3' -55.2 NC_005337.1 + 40651 0.67 0.825198
Target:  5'- aGGuCCCGaCGCAGuGggGCGCccucUAGGCg -3'
miRNA:   3'- aUCuGGGC-GUGUCuCuaCGCG----AUCUG- -5'
25519 3' -55.2 NC_005337.1 + 110857 0.67 0.825198
Target:  5'- --cGCCCGUugACGGGGAUGUGCUuguacgucuGGCa -3'
miRNA:   3'- aucUGGGCG--UGUCUCUACGCGAu--------CUG- -5'
25519 3' -55.2 NC_005337.1 + 57271 0.68 0.807331
Target:  5'- cGGGgCCGCGCGGGGccgGCGCgcgcGGCu -3'
miRNA:   3'- aUCUgGGCGUGUCUCua-CGCGau--CUG- -5'
25519 3' -55.2 NC_005337.1 + 80528 0.68 0.80642
Target:  5'- gAGGCCCgggGCGCGGAGAUGUccacccgGCagaGGGCg -3'
miRNA:   3'- aUCUGGG---CGUGUCUCUACG-------CGa--UCUG- -5'
25519 3' -55.2 NC_005337.1 + 77209 0.68 0.779288
Target:  5'- -uGAUCCGCACGcgcgagggguuGAGGUGCGUcaggaAGACg -3'
miRNA:   3'- auCUGGGCGUGU-----------CUCUACGCGa----UCUG- -5'
25519 3' -55.2 NC_005337.1 + 83495 0.68 0.769647
Target:  5'- gAGGCCCGCAUAGucguaGGAggGCGCgAGGu -3'
miRNA:   3'- aUCUGGGCGUGUC-----UCUa-CGCGaUCUg -5'
25519 3' -55.2 NC_005337.1 + 32094 0.69 0.73998
Target:  5'- ----aCCGCGCGGGGAUGaCGUgcgAGGCg -3'
miRNA:   3'- aucugGGCGUGUCUCUAC-GCGa--UCUG- -5'
25519 3' -55.2 NC_005337.1 + 91662 0.69 0.729877
Target:  5'- cGGugCCGCACAuGGcggGCGCUAG-Ca -3'
miRNA:   3'- aUCugGGCGUGUcUCua-CGCGAUCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.