miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 3' -48.5 NC_005337.1 + 123342 1.14 0.007471
Target:  5'- aGGGACGGGAAAACGAUCAUCUUCGACg -3'
miRNA:   3'- -CCCUGCCCUUUUGCUAGUAGAAGCUG- -5'
25520 3' -48.5 NC_005337.1 + 116975 0.78 0.709597
Target:  5'- aGGACGaGGAGGGCGGgcaCAUCcUCGACa -3'
miRNA:   3'- cCCUGC-CCUUUUGCUa--GUAGaAGCUG- -5'
25520 3' -48.5 NC_005337.1 + 117870 0.75 0.860818
Target:  5'- gGGGACGGGGcgucugucgcAGACGggCGaCUUUGGCg -3'
miRNA:   3'- -CCCUGCCCU----------UUUGCuaGUaGAAGCUG- -5'
25520 3' -48.5 NC_005337.1 + 34041 0.74 0.883787
Target:  5'- cGGGCGGGAccGCGAUCAcgCgcacgCGGCg -3'
miRNA:   3'- cCCUGCCCUuuUGCUAGUa-Gaa---GCUG- -5'
25520 3' -48.5 NC_005337.1 + 93641 0.72 0.943944
Target:  5'- cGGGACcuGGAuGACGA-CGUCUUCGuCg -3'
miRNA:   3'- -CCCUGc-CCUuUUGCUaGUAGAAGCuG- -5'
25520 3' -48.5 NC_005337.1 + 52540 0.71 0.960759
Target:  5'- uGGACGGGA--GCG-UCAUCguguacaUCGGCu -3'
miRNA:   3'- cCCUGCCCUuuUGCuAGUAGa------AGCUG- -5'
25520 3' -48.5 NC_005337.1 + 10344 0.71 0.960759
Target:  5'- cGGGGCGuGGGGAACG-UCGUCacgccgUCaGACa -3'
miRNA:   3'- -CCCUGC-CCUUUUGCuAGUAGa-----AG-CUG- -5'
25520 3' -48.5 NC_005337.1 + 39613 0.71 0.964346
Target:  5'- cGGGCGGGA--GCGgAUCGUCUcgCGGg -3'
miRNA:   3'- cCCUGCCCUuuUGC-UAGUAGAa-GCUg -5'
25520 3' -48.5 NC_005337.1 + 83662 0.7 0.978878
Target:  5'- aGGGAccCGGGggGAgGGggcuuccgCcgCUUCGGCg -3'
miRNA:   3'- -CCCU--GCCCuuUUgCUa-------GuaGAAGCUG- -5'
25520 3' -48.5 NC_005337.1 + 34551 0.7 0.981157
Target:  5'- -cGGCGGGAGAGCG-UCcuGUCcgCGACg -3'
miRNA:   3'- ccCUGCCCUUUUGCuAG--UAGaaGCUG- -5'
25520 3' -48.5 NC_005337.1 + 107082 0.7 0.983247
Target:  5'- aGGGggugccgcuguGCGcGGAgccucaAGACG-UCGUCUUCGACg -3'
miRNA:   3'- -CCC-----------UGC-CCU------UUUGCuAGUAGAAGCUG- -5'
25520 3' -48.5 NC_005337.1 + 51122 0.7 0.983247
Target:  5'- -cGGCGGGAGGGCGAgaUgAUCgcCGACu -3'
miRNA:   3'- ccCUGCCCUUUUGCU--AgUAGaaGCUG- -5'
25520 3' -48.5 NC_005337.1 + 50980 0.69 0.986897
Target:  5'- cGGGCGGGGcgccgcGCGuUCGUCgUCGGCc -3'
miRNA:   3'- cCCUGCCCUuu----UGCuAGUAGaAGCUG- -5'
25520 3' -48.5 NC_005337.1 + 48319 0.69 0.986897
Target:  5'- gGGGcACGGGGAuguGCGuggacugCUUCGACu -3'
miRNA:   3'- -CCC-UGCCCUUu--UGCuagua--GAAGCUG- -5'
25520 3' -48.5 NC_005337.1 + 62498 0.69 0.988475
Target:  5'- cGGGCGGGGcgGCcgccuauUUAUUUUCGACa -3'
miRNA:   3'- cCCUGCCCUuuUGcu-----AGUAGAAGCUG- -5'
25520 3' -48.5 NC_005337.1 + 85411 0.69 0.988475
Target:  5'- cGGGCGGGGAcGCGcacUCGUCcaUGACg -3'
miRNA:   3'- cCCUGCCCUUuUGCu--AGUAGaaGCUG- -5'
25520 3' -48.5 NC_005337.1 + 38248 0.69 0.989901
Target:  5'- aGGGCGGGc--GCgGAUCAUUUcgCGACg -3'
miRNA:   3'- cCCUGCCCuuuUG-CUAGUAGAa-GCUG- -5'
25520 3' -48.5 NC_005337.1 + 23084 0.69 0.991185
Target:  5'- cGGGGucCGGGAAGACGGuguaccugcucUCGcUCUUCcgGACg -3'
miRNA:   3'- -CCCU--GCCCUUUUGCU-----------AGU-AGAAG--CUG- -5'
25520 3' -48.5 NC_005337.1 + 56579 0.69 0.991185
Target:  5'- cGGGACcccguGGAGAGCGAgu-UCgUCGACc -3'
miRNA:   3'- -CCCUGc----CCUUUUGCUaguAGaAGCUG- -5'
25520 3' -48.5 NC_005337.1 + 71952 0.69 0.992337
Target:  5'- uGGGcuCGGGcAAGACGGUCAUCgcgCuGCu -3'
miRNA:   3'- -CCCu-GCCC-UUUUGCUAGUAGaa-GcUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.