miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 3' -48.5 NC_005337.1 + 6491 0.68 0.995807
Target:  5'- cGGACGaGGAGGuCGAUCGgcggCUUCcGCu -3'
miRNA:   3'- cCCUGC-CCUUUuGCUAGUa---GAAGcUG- -5'
25520 3' -48.5 NC_005337.1 + 10344 0.71 0.960759
Target:  5'- cGGGGCGuGGGGAACG-UCGUCacgccgUCaGACa -3'
miRNA:   3'- -CCCUGC-CCUUUUGCuAGUAGa-----AG-CUG- -5'
25520 3' -48.5 NC_005337.1 + 10901 0.68 0.995807
Target:  5'- gGGGACGGGGuacagGGGCGGgggCAggUCcUCGAa -3'
miRNA:   3'- -CCCUGCCCU-----UUUGCUa--GU--AGaAGCUg -5'
25520 3' -48.5 NC_005337.1 + 13900 0.67 0.998529
Target:  5'- -uGACGGGGAccAGCG-UCAUCgUCGGg -3'
miRNA:   3'- ccCUGCCCUU--UUGCuAGUAGaAGCUg -5'
25520 3' -48.5 NC_005337.1 + 20791 0.66 0.99919
Target:  5'- gGGGACGGGcgugccGGAGCuggacaggaaGGUCAggaUCUUgGACu -3'
miRNA:   3'- -CCCUGCCC------UUUUG----------CUAGU---AGAAgCUG- -5'
25520 3' -48.5 NC_005337.1 + 22545 0.66 0.999344
Target:  5'- uGGACGGGAAGACcuUCAcCgcgGACg -3'
miRNA:   3'- cCCUGCCCUUUUGcuAGUaGaagCUG- -5'
25520 3' -48.5 NC_005337.1 + 23084 0.69 0.991185
Target:  5'- cGGGGucCGGGAAGACGGuguaccugcucUCGcUCUUCcgGACg -3'
miRNA:   3'- -CCCU--GCCCUUUUGCU-----------AGU-AGAAG--CUG- -5'
25520 3' -48.5 NC_005337.1 + 34041 0.74 0.883787
Target:  5'- cGGGCGGGAccGCGAUCAcgCgcacgCGGCg -3'
miRNA:   3'- cCCUGCCCUuuUGCUAGUa-Gaa---GCUG- -5'
25520 3' -48.5 NC_005337.1 + 34551 0.7 0.981157
Target:  5'- -cGGCGGGAGAGCG-UCcuGUCcgCGACg -3'
miRNA:   3'- ccCUGCCCUUUUGCuAG--UAGaaGCUG- -5'
25520 3' -48.5 NC_005337.1 + 38248 0.69 0.989901
Target:  5'- aGGGCGGGc--GCgGAUCAUUUcgCGACg -3'
miRNA:   3'- cCCUGCCCuuuUG-CUAGUAGAa-GCUG- -5'
25520 3' -48.5 NC_005337.1 + 39613 0.71 0.964346
Target:  5'- cGGGCGGGA--GCGgAUCGUCUcgCGGg -3'
miRNA:   3'- cCCUGCCCUuuUGC-UAGUAGAa-GCUg -5'
25520 3' -48.5 NC_005337.1 + 46978 0.66 0.99919
Target:  5'- uGGACauGGAGACGAgcuUCAUCUUCGu- -3'
miRNA:   3'- cCCUGccCUUUUGCU---AGUAGAAGCug -5'
25520 3' -48.5 NC_005337.1 + 47789 0.68 0.995532
Target:  5'- aGGGCGGGGugcugcgcacguGCGAccccUCGcgCUUCGACg -3'
miRNA:   3'- cCCUGCCCUuu----------UGCU----AGUa-GAAGCUG- -5'
25520 3' -48.5 NC_005337.1 + 48319 0.69 0.986897
Target:  5'- gGGGcACGGGGAuguGCGuggacugCUUCGACu -3'
miRNA:   3'- -CCC-UGCCCUUu--UGCuagua--GAAGCUG- -5'
25520 3' -48.5 NC_005337.1 + 50980 0.69 0.986897
Target:  5'- cGGGCGGGGcgccgcGCGuUCGUCgUCGGCc -3'
miRNA:   3'- cCCUGCCCUuu----UGCuAGUAGaAGCUG- -5'
25520 3' -48.5 NC_005337.1 + 51122 0.7 0.983247
Target:  5'- -cGGCGGGAGGGCGAgaUgAUCgcCGACu -3'
miRNA:   3'- ccCUGCCCUUUUGCU--AgUAGaaGCUG- -5'
25520 3' -48.5 NC_005337.1 + 51498 0.68 0.992969
Target:  5'- cGGugGGGuucgugcaccCGAUCAucauggcgcUCUUCGGCg -3'
miRNA:   3'- cCCugCCCuuuu------GCUAGU---------AGAAGCUG- -5'
25520 3' -48.5 NC_005337.1 + 52540 0.71 0.960759
Target:  5'- uGGACGGGA--GCG-UCAUCguguacaUCGGCu -3'
miRNA:   3'- cCCUGCCCUuuUGCuAGUAGa------AGCUG- -5'
25520 3' -48.5 NC_005337.1 + 54571 0.66 0.999344
Target:  5'- cGGGcACuGGGGcaAGACGcgCAUCUaCGAg -3'
miRNA:   3'- -CCC-UG-CCCU--UUUGCuaGUAGAaGCUg -5'
25520 3' -48.5 NC_005337.1 + 55430 0.67 0.998529
Target:  5'- aGGACGGGAAGu---UCAUCaaaGACa -3'
miRNA:   3'- cCCUGCCCUUUugcuAGUAGaagCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.