Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25520 | 3' | -48.5 | NC_005337.1 | + | 123342 | 1.14 | 0.007471 |
Target: 5'- aGGGACGGGAAAACGAUCAUCUUCGACg -3' miRNA: 3'- -CCCUGCCCUUUUGCUAGUAGAAGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 121533 | 0.66 | 0.999006 |
Target: 5'- cGGACGuGGAGACGGaCAUCcucCGGCa -3' miRNA: 3'- cCCUGCcCUUUUGCUaGUAGaa-GCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 118648 | 0.66 | 0.99919 |
Target: 5'- cGGGGCGGGGcgcGACGcgCA-CggaGACg -3' miRNA: 3'- -CCCUGCCCUu--UUGCuaGUaGaagCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 117870 | 0.75 | 0.860818 |
Target: 5'- gGGGACGGGGcgucugucgcAGACGggCGaCUUUGGCg -3' miRNA: 3'- -CCCUGCCCU----------UUUGCuaGUaGAAGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 116975 | 0.78 | 0.709597 |
Target: 5'- aGGACGaGGAGGGCGGgcaCAUCcUCGACa -3' miRNA: 3'- cCCUGC-CCUUUUGCUa--GUAGaAGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 108014 | 0.66 | 0.999255 |
Target: 5'- aGGGCGGGcgcgugauggcgcccAAGcagaagauguACGAcaagcacgugcUCAUCUUCGACu -3' miRNA: 3'- cCCUGCCC---------------UUU----------UGCU-----------AGUAGAAGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 107082 | 0.7 | 0.983247 |
Target: 5'- aGGGggugccgcuguGCGcGGAgccucaAGACG-UCGUCUUCGACg -3' miRNA: 3'- -CCC-----------UGC-CCU------UUUGCuAGUAGAAGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 104300 | 0.66 | 0.999344 |
Target: 5'- aGGACGGGAucACGcccgacGUCAUCaUCaACu -3' miRNA: 3'- cCCUGCCCUuuUGC------UAGUAGaAGcUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 100684 | 0.66 | 0.99919 |
Target: 5'- cGGugcuCGGGcucGAGACGGUCuGUC-UCGGCg -3' miRNA: 3'- cCCu---GCCC---UUUUGCUAG-UAGaAGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 98460 | 0.66 | 0.999398 |
Target: 5'- uGGcGCGGGAAGuacacguaccgcaucACGAggucCAcCUUCGACg -3' miRNA: 3'- -CCcUGCCCUUU---------------UGCUa---GUaGAAGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 93641 | 0.72 | 0.943944 |
Target: 5'- cGGGACcuGGAuGACGA-CGUCUUCGuCg -3' miRNA: 3'- -CCCUGc-CCUuUUGCUaGUAGAAGCuG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 91610 | 0.67 | 0.997871 |
Target: 5'- cGGGCGcGGAAGcCGAUC-UCgggCGGCc -3' miRNA: 3'- cCCUGC-CCUUUuGCUAGuAGaa-GCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 85411 | 0.69 | 0.988475 |
Target: 5'- cGGGCGGGGAcGCGcacUCGUCcaUGACg -3' miRNA: 3'- cCCUGCCCUUuUGCu--AGUAGaaGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 84746 | 0.66 | 0.99919 |
Target: 5'- cGGGAgauCGaGGAGAACGugugucccAUCGUCaUCGAg -3' miRNA: 3'- -CCCU---GC-CCUUUUGC--------UAGUAGaAGCUg -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 83662 | 0.7 | 0.978878 |
Target: 5'- aGGGAccCGGGggGAgGGggcuuccgCcgCUUCGGCg -3' miRNA: 3'- -CCCU--GCCCuuUUgCUa-------GuaGAAGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 76924 | 0.66 | 0.999155 |
Target: 5'- gGGGGCGGGAguuacaaAAACGcgCucUCUUuuuaacgCGGCg -3' miRNA: 3'- -CCCUGCCCU-------UUUGCuaGu-AGAA-------GCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 71952 | 0.69 | 0.992337 |
Target: 5'- uGGGcuCGGGcAAGACGGUCAUCgcgCuGCu -3' miRNA: 3'- -CCCu-GCCC-UUUUGCUAGUAGaa-GcUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 67917 | 0.67 | 0.998529 |
Target: 5'- cGGACGGGAGugccGCGGUgGUCgcgcUCcACg -3' miRNA: 3'- cCCUGCCCUUu---UGCUAgUAGa---AGcUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 62498 | 0.69 | 0.988475 |
Target: 5'- cGGGCGGGGcgGCcgccuauUUAUUUUCGACa -3' miRNA: 3'- cCCUGCCCUuuUGcu-----AGUAGAAGCUG- -5' |
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25520 | 3' | -48.5 | NC_005337.1 | + | 58431 | 0.68 | 0.996434 |
Target: 5'- cGGAgCGGcGAGACGAUCAgCggCGACc -3' miRNA: 3'- cCCU-GCCcUUUUGCUAGUaGaaGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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