miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 3' -48.5 NC_005337.1 + 93641 0.72 0.943944
Target:  5'- cGGGACcuGGAuGACGA-CGUCUUCGuCg -3'
miRNA:   3'- -CCCUGc-CCUuUUGCUaGUAGAAGCuG- -5'
25520 3' -48.5 NC_005337.1 + 104300 0.66 0.999344
Target:  5'- aGGACGGGAucACGcccgacGUCAUCaUCaACu -3'
miRNA:   3'- cCCUGCCCUuuUGC------UAGUAGaAGcUG- -5'
25520 3' -48.5 NC_005337.1 + 54571 0.66 0.999344
Target:  5'- cGGGcACuGGGGcaAGACGcgCAUCUaCGAg -3'
miRNA:   3'- -CCC-UG-CCCU--UUUGCuaGUAGAaGCUg -5'
25520 3' -48.5 NC_005337.1 + 22545 0.66 0.999344
Target:  5'- uGGACGGGAAGACcuUCAcCgcgGACg -3'
miRNA:   3'- cCCUGCCCUUUUGcuAGUaGaagCUG- -5'
25520 3' -48.5 NC_005337.1 + 20791 0.66 0.99919
Target:  5'- gGGGACGGGcgugccGGAGCuggacaggaaGGUCAggaUCUUgGACu -3'
miRNA:   3'- -CCCUGCCC------UUUUG----------CUAGU---AGAAgCUG- -5'
25520 3' -48.5 NC_005337.1 + 118648 0.66 0.99919
Target:  5'- cGGGGCGGGGcgcGACGcgCA-CggaGACg -3'
miRNA:   3'- -CCCUGCCCUu--UUGCuaGUaGaagCUG- -5'
25520 3' -48.5 NC_005337.1 + 84746 0.66 0.99919
Target:  5'- cGGGAgauCGaGGAGAACGugugucccAUCGUCaUCGAg -3'
miRNA:   3'- -CCCU---GC-CCUUUUGC--------UAGUAGaAGCUg -5'
25520 3' -48.5 NC_005337.1 + 76924 0.66 0.999155
Target:  5'- gGGGGCGGGAguuacaaAAACGcgCucUCUUuuuaacgCGGCg -3'
miRNA:   3'- -CCCUGCCCU-------UUUGCuaGu-AGAA-------GCUG- -5'
25520 3' -48.5 NC_005337.1 + 121533 0.66 0.999006
Target:  5'- cGGACGuGGAGACGGaCAUCcucCGGCa -3'
miRNA:   3'- cCCUGCcCUUUUGCUaGUAGaa-GCUG- -5'
25520 3' -48.5 NC_005337.1 + 55430 0.67 0.998529
Target:  5'- aGGACGGGAAGu---UCAUCaaaGACa -3'
miRNA:   3'- cCCUGCCCUUUugcuAGUAGaagCUG- -5'
25520 3' -48.5 NC_005337.1 + 67917 0.67 0.998529
Target:  5'- cGGACGGGAGugccGCGGUgGUCgcgcUCcACg -3'
miRNA:   3'- cCCUGCCCUUu---UGCUAgUAGa---AGcUG- -5'
25520 3' -48.5 NC_005337.1 + 52540 0.71 0.960759
Target:  5'- uGGACGGGA--GCG-UCAUCguguacaUCGGCu -3'
miRNA:   3'- cCCUGCCCUuuUGCuAGUAGa------AGCUG- -5'
25520 3' -48.5 NC_005337.1 + 39613 0.71 0.964346
Target:  5'- cGGGCGGGA--GCGgAUCGUCUcgCGGg -3'
miRNA:   3'- cCCUGCCCUuuUGC-UAGUAGAa-GCUg -5'
25520 3' -48.5 NC_005337.1 + 71952 0.69 0.992337
Target:  5'- uGGGcuCGGGcAAGACGGUCAUCgcgCuGCu -3'
miRNA:   3'- -CCCu-GCCC-UUUUGCUAGUAGaa-GcUG- -5'
25520 3' -48.5 NC_005337.1 + 47789 0.68 0.995532
Target:  5'- aGGGCGGGGugcugcgcacguGCGAccccUCGcgCUUCGACg -3'
miRNA:   3'- cCCUGCCCUuu----------UGCU----AGUa-GAAGCUG- -5'
25520 3' -48.5 NC_005337.1 + 6491 0.68 0.995807
Target:  5'- cGGACGaGGAGGuCGAUCGgcggCUUCcGCu -3'
miRNA:   3'- cCCUGC-CCUUUuGCUAGUa---GAAGcUG- -5'
25520 3' -48.5 NC_005337.1 + 91610 0.67 0.997871
Target:  5'- cGGGCGcGGAAGcCGAUC-UCgggCGGCc -3'
miRNA:   3'- cCCUGC-CCUUUuGCUAGuAGaa-GCUG- -5'
25520 3' -48.5 NC_005337.1 + 13900 0.67 0.998529
Target:  5'- -uGACGGGGAccAGCG-UCAUCgUCGGg -3'
miRNA:   3'- ccCUGCCCUU--UUGCuAGUAGaAGCUg -5'
25520 3' -48.5 NC_005337.1 + 98460 0.66 0.999398
Target:  5'- uGGcGCGGGAAGuacacguaccgcaucACGAggucCAcCUUCGACg -3'
miRNA:   3'- -CCcUGCCCUUU---------------UGCUa---GUaGAAGCUG- -5'
25520 3' -48.5 NC_005337.1 + 116975 0.78 0.709597
Target:  5'- aGGACGaGGAGGGCGGgcaCAUCcUCGACa -3'
miRNA:   3'- cCCUGC-CCUUUUGCUa--GUAGaAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.